COL4A2 collagen type IV alpha 2 chain [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: COL4A2provided by CGNC
Official Full Name: collagen type IV alpha 2 chainprovided by CGNC
Primary source: CGNC:12638
See related: Ensembl:ENSGALG00010014324
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 51

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (138919708..139061817)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (138918898..139060977)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in basement membrane	IEA Inferred from Electronic Annotation more info	PubMed
part_of collagen trimer	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-2(IV) chain

Names: collagen, type IV, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001162390.2 → NP_001155862.2 collagen alpha-2(IV) chain precursor

Status: VALIDATED

Source sequence(s)

JAENSK010000025

UniProtKB/TrEMBL

A0A8V0YNS3, A0A8V0YQI0

Related

ENSGALP00010020282.1, ENSGALT00010034533.1

Conserved Domains (4) summary

smart00111
Location:1604 → 1714

C4; C-terminal tandem repeated domain in type 4 procollagens

PRK14959
Location:1222 → 1357

PRK14959; DNA polymerase III subunits gamma and tau; Provisional

pfam09606
Location:1153 → 1480

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

cl02467
Location:1493 → 1600

C4; C-terminal tandem repeated domain in type 4 procollagen

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

138919708..139061817

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015277855.4 → XP_015133341.3 collagen alpha-2(IV) chain isoform X1

UniProtKB/TrEMBL

A0A8V0YNS3, A0A8V0YQI0

Conserved Domains (4) summary

smart00111
Location:1604 → 1714

C4; C-terminal tandem repeated domain in type 4 procollagens

PRK14959
Location:1222 → 1357

PRK14959; DNA polymerase III subunits gamma and tau; Provisional

pfam09606
Location:1153 → 1480

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

cl02467
Location:1493 → 1600

C4; C-terminal tandem repeated domain in type 4 procollagen
XM_046941167.1 → XP_046797123.1 collagen alpha-2(IV) chain isoform X2
XM_046941168.1 → XP_046797124.1 collagen alpha-2(IV) chain isoform X2
XM_046941165.1 → XP_046797121.1 collagen alpha-2(IV) chain isoform X2
XM_015277856.4 → XP_015133342.3 collagen alpha-2(IV) chain isoform X1

UniProtKB/TrEMBL

A0A8V0YNS3, A0A8V0YQI0

Conserved Domains (4) summary

smart00111
Location:1604 → 1714

C4; C-terminal tandem repeated domain in type 4 procollagens

PRK14959
Location:1222 → 1357

PRK14959; DNA polymerase III subunits gamma and tau; Provisional

pfam09606
Location:1153 → 1480

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

cl02467
Location:1493 → 1600

C4; C-terminal tandem repeated domain in type 4 procollagen
XM_046941173.1 → XP_046797129.1 collagen alpha-2(IV) chain isoform X2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

138918898..139060977

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046908106.1 → XP_046764062.1 collagen alpha-2(IV) chain isoform X1

UniProtKB/TrEMBL

A0A8V0YQI0
XM_046908109.1 → XP_046764065.1 collagen alpha-2(IV) chain isoform X2
XM_046908110.1 → XP_046764066.1 collagen alpha-2(IV) chain isoform X2
XM_046908108.1 → XP_046764064.1 collagen alpha-2(IV) chain isoform X2
XM_046908107.1 → XP_046764063.1 collagen alpha-2(IV) chain isoform X1

UniProtKB/TrEMBL

A0A8V0YQI0
XM_046908111.1 → XP_046764067.1 collagen alpha-2(IV) chain isoform X2