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    ATF7IP activating transcription factor 7 interacting protein [ Gallus gallus (chicken) ]

    Gene ID: 417966, updated on 3-Dec-2024

    Summary

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    Symbol
    ATF7IPprovided by CGNC
    Full Name
    activating transcription factor 7 interacting proteinprovided by CGNC
    Primary source
    CGNC:8959
    See related
    Ensembl:ENSGALG00010011144
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    MCAF1
    Orthologs
    human mouse all
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    Genomic context

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    See ATF7IP in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (48832387..48942133)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (49130728..49241582)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053841 Neighboring gene uncharacterized LOC121109324 Neighboring gene uncharacterized LOC121109325 Neighboring gene uncharacterized LOC121109322 Neighboring gene uncharacterized LOC121109323 Neighboring gene phospholipase B domain containing 1 Neighboring gene guanylate cyclase 2C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating transcription factor 7-interacting protein 1
    Names
    MBD1-containing chromatin-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012813.2 → NP_001012831.1  activating transcription factor 7-interacting protein 1 isoform a

      See identical proteins and their annotated locations for NP_001012831.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZIE8
      UniProtKB/TrEMBL
      A0A8V0Y8C5
      Related
      ENSGALP00010015204.1, ENSGALT00010026653.1
      Conserved Domains (4) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:635 → 990
      PHA03247; large tegument protein UL36; Provisional
      pfam16788
      Location:377 → 588
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:976 → 1076
      fn3_4; Fibronectin-III type domain

    2. NM_001397085.1 → NP_001384014.1  activating transcription factor 7-interacting protein 1 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZIE8
      UniProtKB/TrEMBL
      A0A8V0Y8C5
      Conserved Domains (4) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:635 → 990
      PHA03247; large tegument protein UL36; Provisional
      pfam16788
      Location:377 → 588
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:976 → 1076
      fn3_4; Fibronectin-III type domain

    3. NM_001397086.1 → NP_001384015.1  activating transcription factor 7-interacting protein 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A8V0Y8C5
      Conserved Domains (2) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:635 → 989
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      48832387..48942133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040696356.2 → XP_040552290.1  activating transcription factor 7-interacting protein 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZIE8
      UniProtKB/TrEMBL
      A0A8V0Y8C5
      Related
      ENSGALP00010015208.1, ENSGALT00010026657.1
      Conserved Domains (4) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:635 → 990
      PHA03247; large tegument protein UL36; Provisional
      pfam16788
      Location:377 → 588
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:976 → 1076
      fn3_4; Fibronectin-III type domain

    2. XM_025148445.3 → XP_025004213.2  activating transcription factor 7-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y8C5
      Conserved Domains (2) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:635 → 989
      PHA03247; large tegument protein UL36; Provisional

    3. XM_046938700.1 → XP_046794656.1  activating transcription factor 7-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    4. XM_015284951.4 → XP_015140437.2  activating transcription factor 7-interacting protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y8C0
      Conserved Domains (2) summary
      PTZ00121
      Location:4 → 518
      PTZ00121; MAEBL; Provisional
      pfam05109
      Location:481 → 791
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    5. XM_046938687.1 → XP_046794643.1  activating transcription factor 7-interacting protein 1 isoform X7

    6. XM_040696352.2 → XP_040552286.1  activating transcription factor 7-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8C5, A0A8V0YC32
      Related
      ENSGALP00010015206.1, ENSGALT00010026655.1
      Conserved Domains (2) summary
      PTZ00121
      Location:22 → 536
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:653 → 1008
      PHA03247; large tegument protein UL36; Provisional

    7. XM_046938722.1 → XP_046794678.1  activating transcription factor 7-interacting protein 1 isoform X5

    8. XM_040696326.2 → XP_040552260.1  activating transcription factor 7-interacting protein 1 isoform X8

      Conserved Domains (2) summary
      PTZ00121
      Location:22 → 536
      PTZ00121; MAEBL; Provisional
      pfam05109
      Location:499 → 809
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    9. XM_046938676.1 → XP_046794632.1  activating transcription factor 7-interacting protein 1 isoform X9

    10. XM_046938681.1 → XP_046794637.1  activating transcription factor 7-interacting protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y8C0

    11. XM_040696335.2 → XP_040552269.2  activating transcription factor 7-interacting protein 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZIE8
      UniProtKB/TrEMBL
      A0A8V0Y8C5

    12. XM_040696343.2 → XP_040552277.2  activating transcription factor 7-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    13. XM_025148451.3 → XP_025004219.3  activating transcription factor 7-interacting protein 1 isoform X12

    14. XM_025148446.3 → XP_025004214.3  activating transcription factor 7-interacting protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    15. XM_040696320.2 → XP_040552254.2  activating transcription factor 7-interacting protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y8C0
      Related
      ENSGALP00010015201.1, ENSGALT00010026650.1

    16. XM_025148448.3 → XP_025004216.3  activating transcription factor 7-interacting protein 1 isoform X11

    17. XM_040696324.2 → XP_040552258.2  activating transcription factor 7-interacting protein 1 isoform X7

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49130728..49241582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907404.1 → XP_046763360.1  activating transcription factor 7-interacting protein 1 isoform X17

    2. XM_046907411.1 → XP_046763367.1  activating transcription factor 7-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    3. XM_046907413.1 → XP_046763369.1  activating transcription factor 7-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    4. XM_046907407.1 → XP_046763363.1  activating transcription factor 7-interacting protein 1 isoform X18

    5. XM_046907412.1 → XP_046763368.1  activating transcription factor 7-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    6. XM_046907400.1 → XP_046763356.1  activating transcription factor 7-interacting protein 1 isoform X13

    7. XM_046907401.1 → XP_046763357.1  activating transcription factor 7-interacting protein 1 isoform X14

    8. XM_046907408.1 → XP_046763364.1  activating transcription factor 7-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    9. XM_046907409.1 → XP_046763365.1  activating transcription factor 7-interacting protein 1 isoform X19

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    10. XM_046907414.1 → XP_046763370.1  activating transcription factor 7-interacting protein 1 isoform X21

    11. XM_046907415.1 → XP_046763371.1  activating transcription factor 7-interacting protein 1 isoform X5

    12. XM_046907402.1 → XP_046763358.1  activating transcription factor 7-interacting protein 1 isoform X15

    13. XM_046907410.1 → XP_046763366.1  activating transcription factor 7-interacting protein 1 isoform X20

      UniProtKB/TrEMBL
      A0A8V0Y8C5

    14. XM_046907405.1 → XP_046763361.1  activating transcription factor 7-interacting protein 1 isoform X17

    15. XM_046907403.1 → XP_046763359.1  activating transcription factor 7-interacting protein 1 isoform X16

    16. XM_046907406.1 → XP_046763362.1  activating transcription factor 7-interacting protein 1 isoform X17

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZIE8.1 GenPept UniProtKB/Swiss-Prot:Q5ZIE8

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