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    EDC3 enhancer of mRNA decapping 3 [ Gallus gallus (chicken) ]

    Gene ID: 415294, updated on 3-Dec-2024

    Summary

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    Symbol
    EDC3provided by CGNC
    Full Name
    enhancer of mRNA decapping 3provided by CGNC
    Primary source
    CGNC:917
    See related
    Ensembl:ENSGALG00010021131
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    YJDC; LSM16
    Orthologs
    human mouse all
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    Genomic context

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    See EDC3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (2474890..2500676)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (2348228..2374021)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 1, subfamily A, polypeptide 2 Neighboring gene cytochrome P450, family 1, subfamily A, polypeptide 1 Neighboring gene CDC like kinase 3 Neighboring gene AT-rich interaction domain 3B Neighboring gene actin gamma 1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    enhancer of mRNA-decapping protein 3
    Names
    LSM16 homolog (EDC3, S. cerevisiae)
    enhancer of mRNA decapping 3 homolog
    yjeF domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030385.2 → NP_001025556.2  enhancer of mRNA-decapping protein 3

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000245
      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2
      Conserved Domains (4) summary
      cd01737
      Location:2 → 66
      LSm16_N; Like-Sm protein 16, N-terminal domain
      pfam09532
      Location:197 → 298
      FDF; FDF domain
      pfam03853
      Location:300 → 453
      YjeF_N; YjeF-related protein N-terminus
      pfam16598
      Location:102 → 195
      Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2474890..2500676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046898948.1 → XP_046754904.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    2. XM_015278798.4 → XP_015134284.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2
      Related
      ENSGALP00010030359.1, ENSGALT00010051168.1
      Conserved Domains (4) summary
      cd01737
      Location:2 → 66
      LSm16_N; Like-Sm protein 16, N-terminal domain
      pfam09532
      Location:197 → 298
      FDF; FDF domain
      pfam03853
      Location:300 → 453
      YjeF_N; YjeF-related protein N-terminus
      pfam16598
      Location:102 → 195
      Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3

    3. XM_046898950.1 → XP_046754906.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    4. XM_046898949.1 → XP_046754905.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    5. XM_015278797.4 → XP_015134283.1  enhancer of mRNA-decapping protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZLS2
      Conserved Domains (4) summary
      cd01737
      Location:31 → 95
      LSm16_N; Like-Sm protein 16, N-terminal domain
      pfam03853
      Location:329 → 482
      YjeF_N; YjeF-related protein N-terminus
      pfam09532
      Location:226 → 327
      FDF; FDF domain
      pfam16598
      Location:131 → 224
      Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2348228..2374021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046924623.1 → XP_046780579.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    2. XM_046924622.1 → XP_046780578.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    3. XM_046924624.1 → XP_046780580.1  enhancer of mRNA-decapping protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZLS2
      UniProtKB/TrEMBL
      A0A1D5NZF2

    4. XM_046924621.1 → XP_046780577.1  enhancer of mRNA-decapping protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZLS2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZLS2.1 GenPept UniProtKB/Swiss-Prot:Q5ZLS2

    Gene LinkOut

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