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    C16orf52 C16orf52 homolog [ Gallus gallus (chicken) ]

    Gene ID: 416615, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C16orf52provided by CGNC
    Official Full Name
    C16orf52 homologprovided by CGNC
    Primary source
    CGNC:50297
    See related
    Ensembl:ENSGALG00010017809
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C14H16ORF52
    Orthologs
    human mouse all
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    Genomic context

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    See C16orf52 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (8563803..8590142)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (8560715..8587060)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel like 7 Neighboring gene transmembrane channel like 5 Neighboring gene glycerophosphodiester phosphodiesterase 1 Neighboring gene centriolar coiled-coil protein 110 Neighboring gene uncharacterized LOC107054626 Neighboring gene von Willebrand factor A domain containing 3A Neighboring gene short chain dehydrogenase/reductase family 42E, member 2B Neighboring gene short chain dehydrogenase/reductase family 42E, member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    modulator of smoothened protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8563803..8590142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_414916.6 → XP_414916.2  modulator of smoothened protein

      See identical proteins and their annotated locations for XP_414916.2

      UniProtKB/TrEMBL
      E1C1C0
      Related
      ENSGALP00010025522.1, ENSGALT00010043032.1
      Conserved Domains (1) summary
      pfam18800
      Location:25 → 166
      Atthog; Attenuator of Hedgehog

    RNA

    1. XR_005839978.2 RNA Sequence

    2. XR_006931489.1 RNA Sequence

    3. XR_006931488.1 RNA Sequence

    4. XR_005839982.2 RNA Sequence

    5. XR_005839979.2 RNA Sequence

    6. XR_005839974.2 RNA Sequence

    7. XR_005839976.2 RNA Sequence

    8. XR_005839975.2 RNA Sequence

    9. XR_005839980.2 RNA Sequence

    10. XR_005839977.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8560715..8587060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040684068.2 → XP_040540002.1  modulator of smoothened protein

      UniProtKB/TrEMBL
      E1C1C0
      Conserved Domains (1) summary
      pfam18800
      Location:25 → 166
      Atthog; Attenuator of Hedgehog

    RNA

    1. XR_005854290.2 RNA Sequence

    2. XR_006936228.1 RNA Sequence

    3. XR_006936227.1 RNA Sequence

    4. XR_005854294.2 RNA Sequence

    5. XR_005854291.2 RNA Sequence

    6. XR_005854286.2 RNA Sequence

    7. XR_005854288.2 RNA Sequence

    8. XR_005854287.2 RNA Sequence

    9. XR_005854292.2 RNA Sequence

    10. XR_005854289.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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