U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LRCH3 leucine rich repeats and calponin homology domain containing 3 [ Gallus gallus (chicken) ]

    Gene ID: 424922, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    LRCH3provided by CGNC
    Full Name
    leucine rich repeats and calponin homology domain containing 3provided by CGNC
    Primary source
    CGNC:5731
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    LRCH4
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LRCH3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (14748436..14800938)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (14542026..14594584)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111468 Neighboring gene rubicon autophagy regulator Neighboring gene forty-two-three domain containing 1 Neighboring gene IQ motif containing G Neighboring gene uncharacterized LOC121111469 Neighboring gene ribosomal protein L35a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat and calponin homology domain-containing protein 3; DISP complex protein LRCH3; LOW QUALITY PROTEIN: DISP complex protein LRCH3
    Names
    leucine rich repeats and calponin homology domain containing 4
    leucine-rich repeats and calponin homology (CH) domain containing 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      14748436..14800938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040705668.2 → XP_040561602.1  LOW QUALITY PROTEIN: DISP complex protein LRCH3 isoform X1

      Conserved Domains (3) summary
      smart00033
      Location:679 → 747
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14542026..14594584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040678672.2 → XP_040534606.1  DISP complex protein LRCH3 isoform X2

      Conserved Domains (3) summary
      smart00033
      Location:710 → 806
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_040678678.2 → XP_040534612.1  DISP complex protein LRCH3 isoform X4

      Conserved Domains (3) summary
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cl00030
      Location:657 → 756
      CH_SF; calponin homology (CH) domain superfamily

    3. XM_040678690.2 → XP_040534624.1  DISP complex protein LRCH3 isoform X9

      Conserved Domains (3) summary
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]
      cl00030
      Location:601 → 700
      CH_SF; calponin homology (CH) domain superfamily

    4. XM_040678676.2 → XP_040534610.1  DISP complex protein LRCH3 isoform X3

      Conserved Domains (3) summary
      smart00033
      Location:679 → 775
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_040678692.2 → XP_040534626.1  DISP complex protein LRCH3 isoform X1

      Conserved Domains (3) summary
      smart00033
      Location:679 → 747
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_040678684.2 → XP_040534618.1  DISP complex protein LRCH3 isoform X6

      Conserved Domains (3) summary
      smart00033
      Location:641 → 737
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    7. XM_040678693.2 → XP_040534627.1  DISP complex protein LRCH3 isoform X11

      Conserved Domains (3) summary
      smart00033
      Location:641 → 709
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    8. XM_040678686.2 → XP_040534620.1  DISP complex protein LRCH3 isoform X7

      Conserved Domains (3) summary
      smart00033
      Location:628 → 724
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    9. XM_040678689.2 → XP_040534623.1  DISP complex protein LRCH3 isoform X8

      Conserved Domains (3) summary
      smart00033
      Location:628 → 696
      CH; Calponin homology domain
      COG4886
      Location:69 → 277
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 75
      LRR_RI; leucine-rich repeat [structural motif]

    10. XM_046924356.1 → XP_046780312.1  DISP complex protein LRCH3 isoform X10

    11. XM_040678679.2 → XP_040534613.1  DISP complex protein LRCH3 isoform X5

      Conserved Domains (3) summary
      smart00033
      Location:658 → 754
      CH; Calponin homology domain
      COG4886
      Location:23 → 225
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:25 → 46
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.