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    ABLIM1 actin binding LIM protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 423911, updated on 3-Dec-2024

    Summary

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    Symbol
    ABLIM1provided by CGNC
    Full Name
    actin binding LIM protein 1provided by CGNC
    Primary source
    CGNC:6882
    See related
    Ensembl:ENSGALG00010022454
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ABLIM1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (28606107..28788420, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (28497053..28679401, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 186 Neighboring gene tudor domain containing 1 Neighboring gene von Willebrand factor A domain containing 2 Neighboring gene actin filament associated protein 1 like 2 Neighboring gene uncharacterized LOC124418061 Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene TruB pseudouridine synthase family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lamellipodium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-binding LIM protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159363.3 → NP_001152835.1  actin-binding LIM protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000232
      UniProtKB/TrEMBL
      A0A8V0ZNG3
      Conserved Domains (6) summary
      smart00153
      Location:702 → 737
      VHP; Villin headpiece domain
      cd09327
      Location:33 → 84
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:89 → 144
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:160 → 211
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:219 → 274
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:316 → 701
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      28606107..28788420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040702464.2 → XP_040558398.1  actin-binding LIM protein 1 isoform X18

      UniProtKB/TrEMBL
      A0A8V0ZNG7
      Conserved Domains (5) summary
      smart00153
      Location:577 → 612
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    2. XM_025151632.3 → XP_025007400.2  actin-binding LIM protein 1 isoform X16

      UniProtKB/TrEMBL
      A0A8V0ZNG7
      Conserved Domains (5) summary
      smart00153
      Location:624 → 659
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    3. XM_040702458.2 → XP_040558392.1  actin-binding LIM protein 1 isoform X15

      UniProtKB/TrEMBL
      A0A8V0ZNG7
      Conserved Domains (5) summary
      smart00153
      Location:626 → 661
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    4. XM_040702459.2 → XP_040558393.1  actin-binding LIM protein 1 isoform X17

      UniProtKB/TrEMBL
      A0A8V0ZQ87
      Conserved Domains (5) summary
      smart00153
      Location:612 → 647
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    5. XM_025151627.3 → XP_025007395.2  actin-binding LIM protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A8V0ZNH2, A0A8V0ZQ93
      Related
      ENSGALP00010033004.1, ENSGALT00010054636.1
      Conserved Domains (5) summary
      smart00153
      Location:659 → 694
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    6. XM_040702453.2 → XP_040558387.1  actin-binding LIM protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A8V0ZQ93
      Conserved Domains (5) summary
      smart00153
      Location:661 → 696
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    7. XM_040702454.2 → XP_040558388.1  actin-binding LIM protein 1 isoform X14

      UniProtKB/TrEMBL
      A0A8V0ZQT0
      Conserved Domains (5) summary
      smart00153
      Location:652 → 687
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    8. XM_040702449.2 → XP_040558383.1  actin-binding LIM protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZQT0
      Conserved Domains (5) summary
      smart00153
      Location:701 → 736
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    9. XM_040702447.2 → XP_040558381.1  actin-binding LIM protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V0ZQT0
      Conserved Domains (5) summary
      smart00153
      Location:717 → 752
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:149 → 200
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:208 → 263
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    10. XM_040702465.2 → XP_040558399.1  actin-binding LIM protein 1 isoform X19

      UniProtKB/TrEMBL
      A0A8V0ZQT0
      Related
      ENSGALP00010033001.1, ENSGALT00010054629.1
      Conserved Domains (5) summary
      smart00153
      Location:710 → 745
      VHP; Villin headpiece domain
      cd09327
      Location:31 → 82
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:87 → 142
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:158 → 209
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:217 → 272
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    11. XM_046942949.1 → XP_046798905.1  actin-binding LIM protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    12. XM_046942951.1 → XP_046798907.1  actin-binding LIM protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZNG7
      Related
      ENSGALP00010032999.1, ENSGALT00010054626.1

    13. XM_040702468.2 → XP_040558402.1  actin-binding LIM protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZQ93
      Conserved Domains (5) summary
      smart00153
      Location:660 → 695
      VHP; Villin headpiece domain
      cd09327
      Location:23 → 74
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:79 → 134
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    14. XM_040702467.2 → XP_040558401.1  actin-binding LIM protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZQ93
      Conserved Domains (5) summary
      smart00153
      Location:662 → 697
      VHP; Villin headpiece domain
      cd09327
      Location:23 → 74
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:79 → 134
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    15. XM_046942950.1 → XP_046798906.1  actin-binding LIM protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZQT0
      Related
      ENSGALP00010032985.1, ENSGALT00010054601.1

    16. XM_040702466.2 → XP_040558400.1  actin-binding LIM protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZNG3
      Related
      ENSGALP00010032994.1, ENSGALT00010054615.1
      Conserved Domains (5) summary
      smart00153
      Location:678 → 713
      VHP; Villin headpiece domain
      cd09327
      Location:23 → 74
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:79 → 134
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins

    17. XM_040702472.2 → XP_040558406.1  actin-binding LIM protein 1 isoform X10

      Conserved Domains (2) summary
      smart00153
      Location:373 → 408
      VHP; Villin headpiece domain
      cl02475
      Location:1 → 24
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    18. XM_040702470.2 → XP_040558404.1  actin-binding LIM protein 1 isoform X8

      Conserved Domains (2) summary
      smart00153
      Location:422 → 457
      VHP; Villin headpiece domain
      cl02475
      Location:1 → 24
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    19. XM_040702471.2 → XP_040558405.1  actin-binding LIM protein 1 isoform X9

      Conserved Domains (2) summary
      smart00153
      Location:413 → 448
      VHP; Villin headpiece domain
      cl02475
      Location:1 → 24
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    20. XM_046942953.1 → XP_046798909.1  actin-binding LIM protein 1 isoform X21

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    21. XM_046942952.1 → XP_046798908.1  actin-binding LIM protein 1 isoform X20

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      28497053..28679401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920350.1 → XP_046776306.1  actin-binding LIM protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    2. XM_046920355.1 → XP_046776311.1  actin-binding LIM protein 1 isoform X29

      UniProtKB/TrEMBL
      A0A8V0ZNG7

    3. XM_046920349.1 → XP_046776305.1  actin-binding LIM protein 1 isoform X27

      UniProtKB/TrEMBL
      A0A8V0ZNG7

    4. XM_046920347.1 → XP_046776303.1  actin-binding LIM protein 1 isoform X26

      UniProtKB/TrEMBL
      A0A8V0ZNG7

    5. XM_046920351.1 → XP_046776307.1  actin-binding LIM protein 1 isoform X28

      UniProtKB/TrEMBL
      A0A8V0ZQ87

    6. XM_046920345.1 → XP_046776301.1  actin-binding LIM protein 1 isoform X24

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    7. XM_046920344.1 → XP_046776300.1  actin-binding LIM protein 1 isoform X23

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    8. XM_046920346.1 → XP_046776302.1  actin-binding LIM protein 1 isoform X25

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    9. XM_046920343.1 → XP_046776299.1  actin-binding LIM protein 1 isoform X22

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    10. XM_046920342.1 → XP_046776298.1  actin-binding LIM protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    11. XM_046920356.1 → XP_046776312.1  actin-binding LIM protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZNG7

    12. XM_046920354.1 → XP_046776310.1  actin-binding LIM protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    13. XM_046920353.1 → XP_046776309.1  actin-binding LIM protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZQ93

    14. XM_046920348.1 → XP_046776304.1  actin-binding LIM protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZQT0

    15. XM_046920352.1 → XP_046776308.1  actin-binding LIM protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZNG3

    16. XM_046920359.1 → XP_046776315.1  actin-binding LIM protein 1 isoform X10

    17. XM_046920357.1 → XP_046776313.1  actin-binding LIM protein 1 isoform X8

    18. XM_046920358.1 → XP_046776314.1  actin-binding LIM protein 1 isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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