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    USP44 ubiquitin specific peptidase 44 [ Gallus gallus (chicken) ]

    Gene ID: 417913, updated on 3-Dec-2024

    Summary

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    Official Symbol
    USP44provided by CGNC
    Official Full Name
    ubiquitin specific peptidase 44provided by CGNC
    Primary source
    CGNC:8664
    See related
    Ensembl:ENSGALG00010011819
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See USP44 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (45604444..45621762, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (45955986..45973301, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751743 Neighboring gene uncharacterized LOC121109142 Neighboring gene methionyl aminopeptidase 2 Neighboring gene netrin 4 Neighboring gene small nuclear ribonucleoprotein polypeptide F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 44
    XP_015139411.1
    XP_015139424.1
    XP_015139431.1
    XP_025010603.1
    XP_025010609.1
    XP_040514558.1
    XP_040514559.1
    XP_040514560.1
    XP_040514561.1
    XP_040514562.1
    XP_040514563.1
    XP_040514564.1
    XP_040527932.1
    XP_040527937.1
    XP_046765003.1
    XP_046765037.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      45604444..45621762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672003.2 → XP_040527937.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y6B4
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 664
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    2. XM_040671998.2 → XP_040527932.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y6B4
      Related
      ENSGALP00010016183.1, ENSGALT00010028246.1
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 668
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    3. XM_015283925.4 → XP_015139411.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Related
      ENSGALP00010016182.1, ENSGALT00010028244.1
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    4. XM_025154841.3 → XP_025010609.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    5. XM_046909047.1 → XP_046765003.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5

    6. XM_015283945.4 → XP_015139431.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    7. XM_015283938.4 → XP_015139424.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    8. XM_025154835.3 → XP_025010603.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      45955986..45973301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040658630.2 → XP_040514564.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y6B4
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 664
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    2. XM_040658629.2 → XP_040514563.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y6B4
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 668
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    3. XM_040658624.2 → XP_040514558.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    4. XM_040658626.2 → XP_040514560.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    5. XM_046909081.1 → XP_046765037.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5

    6. XM_040658628.2 → XP_040514562.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    7. XM_040658625.2 → XP_040514559.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    8. XM_040658627.2 → XP_040514561.1  ubiquitin carboxyl-terminal hydrolase 44 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y6B4, F1P4C5
      Conserved Domains (2) summary
      pfam00443
      Location:272 → 678
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam02148
      Location:26 → 88
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    Nucleotide Protein Strain
    Heading Accession and Version

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