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    CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 [ Gallus gallus (chicken) ]

    Gene ID: 420823, updated on 17-Aug-2024

    Summary

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    Symbol
    CDKAL1provided by CGNC
    Full Name
    CDK5 regulatory subunit associated protein 1 like 1provided by CGNC
    Primary source
    CGNC:9618
    See related
    Ensembl:ENSGALG00010008147
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CDKAL1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (58764321..59141172, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (58696203..59071273, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051650 Neighboring gene uncharacterized LOC107051651 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC121109769 Neighboring gene E2F transcription factor 3 Neighboring gene membrane bound O-acyltransferase domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables N6-threonylcarbomyladenosine methylthiotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylthiolation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    threonylcarbamoyladenosine tRNA methylthiotransferase
    XP_004939679.1
    XP_040520128.1
    XP_040520129.1
    XP_418914.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      58764321..59141172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_418914.8 → XP_418914.3  threonylcarbamoyladenosine tRNA methylthiotransferase

      See identical proteins and their annotated locations for XP_418914.3

      UniProtKB/TrEMBL
      A0A1L1RPT7, E1BRH0
      Conserved Domains (4) summary
      cd01335
      Location:206 → 404
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      TIGR01578
      Location:63 → 490
      MiaB-like-B; MiaB-like tRNA modifying enzyme, archaeal-type
      pfam00919
      Location:63 → 144
      UPF0004; Uncharacterized protein family UPF0004
      cl01282
      Location:431 → 490
      TRAM; TRAM domain

    2. XM_004939622.5 → XP_004939679.1  threonylcarbamoyladenosine tRNA methylthiotransferase

      See identical proteins and their annotated locations for XP_004939679.1

      UniProtKB/TrEMBL
      A0A1L1RPT7, E1BRH0
      Related
      ENSGALP00010010985.1, ENSGALT00010019437.1
      Conserved Domains (4) summary
      cd01335
      Location:206 → 404
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      TIGR01578
      Location:63 → 490
      MiaB-like-B; MiaB-like tRNA modifying enzyme, archaeal-type
      pfam00919
      Location:63 → 144
      UPF0004; Uncharacterized protein family UPF0004
      cl01282
      Location:431 → 490
      TRAM; TRAM domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      58696203..59071273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040664195.2 → XP_040520129.1  threonylcarbamoyladenosine tRNA methylthiotransferase

      Conserved Domains (1) summary
      TIGR01578
      Location:63 → 490
      MiaB-like-B; MiaB-like tRNA modifying enzyme, archaeal-type

    2. XM_040664194.2 → XP_040520128.1  threonylcarbamoyladenosine tRNA methylthiotransferase

      Conserved Domains (1) summary
      TIGR01578
      Location:63 → 490
      MiaB-like-B; MiaB-like tRNA modifying enzyme, archaeal-type
    Nucleotide Protein
    Heading Accession and Version

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