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    YDJC YdjC homolog (bacterial) [ Gallus gallus (chicken) ]

    Gene ID: 771088, updated on 17-Aug-2024

    Summary

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    Official Symbol
    YDJCprovided by CGNC
    Official Full Name
    YdjC homolog (bacterial)provided by CGNC
    Primary source
    CGNC:56498
    See related
    Ensembl:ENSGALG00010024328
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See YDJC in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (381614..404161, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (387162..409689, complement)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051622 Neighboring gene hypermethylated in cancer 2 Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene uncharacterized LOC124417213 Neighboring gene stromal cell derived factor 2 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate deacetylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      381614..404161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001234390.7 → XP_001234391.2  carbohydrate deacetylase

      UniProtKB/TrEMBL
      A0A8V0ZX16
      Related
      ENSGALP00010036198.1, ENSGALT00010059307.1
      Conserved Domains (1) summary
      cd10806
      Location:5 → 293
      YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      387162..409689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040684238.2 → XP_040540172.1  carbohydrate deacetylase

      Conserved Domains (1) summary
      cd10806
      Location:5 → 293
      YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes
    Nucleotide Protein
    Heading Accession and Version

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