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    ABLIM3 actin binding LIM protein family member 3 [ Gallus gallus (chicken) ]

    Gene ID: 416201, updated on 3-Dec-2024

    Summary

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    Symbol
    ABLIM3provided by CGNC
    Full Name
    actin binding LIM protein family member 3provided by CGNC
    Primary source
    CGNC:2013
    See related
    Ensembl:ENSGALG00010012297
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ABLIM3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (8162892..8198082, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (8167984..8203250, complement)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417186 Neighboring gene uncharacterized LOC121106735 Neighboring gene GrpE like 2, mitochondrial Neighboring gene actin filament associated protein 1 like 1 Neighboring gene SH3 domain and tetratricopeptide repeats 2 Neighboring gene adrenoceptor beta 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lamellipodium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-binding LIM protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8162892..8198082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293686.4 → XP_015149172.1  actin-binding LIM protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y8U4, A0A8V0YF19
      Related
      ENSGALP00010017113.1, ENSGALT00010029453.1
      Conserved Domains (6) summary
      smart00153
      Location:652 → 687
      VHP; Villin headpiece domain
      cd09327
      Location:23 → 74
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:79 → 134
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:151 → 202
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:210 → 265
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 651
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    2. XM_015293685.4 → XP_015149171.1  actin-binding LIM protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y8U4
      Conserved Domains (6) summary
      smart00153
      Location:653 → 688
      VHP; Villin headpiece domain
      cd09327
      Location:24 → 75
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:80 → 135
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:152 → 203
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:211 → 266
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:274 → 652
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    3. XM_046900521.1 → XP_046756477.1  actin-binding LIM protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8U4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8167984..8203250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682599.2 → XP_040538533.1  actin-binding LIM protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y8U4, A0A8V0YF19
      Conserved Domains (6) summary
      smart00153
      Location:652 → 687
      VHP; Villin headpiece domain
      cd09327
      Location:23 → 74
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:79 → 134
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:151 → 202
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:210 → 265
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 651
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    2. XM_040682598.2 → XP_040538532.1  actin-binding LIM protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y8U4
      Conserved Domains (6) summary
      smart00153
      Location:653 → 688
      VHP; Villin headpiece domain
      cd09327
      Location:24 → 75
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:80 → 135
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:152 → 203
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:211 → 266
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:274 → 652
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    3. XM_046927170.1 → XP_046783126.1  actin-binding LIM protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y8U4
    Nucleotide Protein
    Heading Accession and Version

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