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    CDHR2 cadherin related family member 2 [ Gallus gallus (chicken) ]

    Gene ID: 416223, updated on 17-Aug-2024

    Summary

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    Symbol
    CDHR2provided by CGNC
    Full Name
    cadherin related family member 2provided by CGNC
    Primary source
    CGNC:50197
    See related
    Ensembl:ENSGALG00010010179
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PCDH24
    Orthologs
    human mouse all
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    Genomic context

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    See CDHR2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (9973199..9981756, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (9975366..9984969, complement)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene synuclein beta Neighboring gene G protein regulated inducer of neurite outgrowth 1 Neighboring gene microRNA 7460 Neighboring gene uncharacterized LOC121106750 Neighboring gene ring finger protein 44 Neighboring gene Fas associated factor family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: cadherin-related family member 2; cadherin-related family member 2
    Names
    protocadherin 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9973199..9981756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293880.4 → XP_015149366.3  cadherin-related family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y4A1
      Related
      ENSGALP00010013784.1, ENSGALT00010024212.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9975366..9984969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040683077.2 → XP_040539011.2  LOW QUALITY PROTEIN: cadherin-related family member 2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials