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    TNRC6A trinucleotide repeat containing 6A [ Gallus gallus (chicken) ]

    Gene ID: 416570, updated on 3-Dec-2024

    Summary

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    Symbol
    TNRC6Aprovided by CGNC
    Full Name
    trinucleotide repeat containing 6Aprovided by CGNC
    Primary source
    CGNC:4550
    See related
    Ensembl:ENSGALG00010017659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6A in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (6820291..6880405)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (6816250..6876347)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054619 Neighboring gene RB binding protein 6, ubiquitin ligase Neighboring gene mucin-5AC-like Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1 Neighboring gene partner and localizer of BRCA2 Neighboring gene dynactin subunit 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6820291..6880405
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046901007.1 → XP_046756963.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    2. XM_046901009.1 → XP_046756965.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    3. XM_046901012.1 → XP_046756968.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6
      Related
      ENSGALP00010025190.1, ENSGALT00010042700.1

    4. XM_046901006.1 → XP_046756962.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6
      Related
      ENSGALP00010025168.1, ENSGALT00010042678.1

    5. XM_046901008.1 → XP_046756964.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    6. XM_046901010.1 → XP_046756966.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    7. XM_046901013.1 → XP_046756969.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    8. XM_046901003.1 → XP_046756959.1  trinucleotide repeat-containing gene 6A protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z268
      Related
      ENSGALP00010025172.1, ENSGALT00010042682.1

    9. XM_046901004.1 → XP_046756960.1  trinucleotide repeat-containing gene 6A protein isoform X3

      UniProtKB/TrEMBL
      A0A8V0YVR7
      Related
      ENSGALP00010025170.1, ENSGALT00010042680.1

    10. XM_040647929.2 → XP_040503863.2  trinucleotide repeat-containing gene 6A protein isoform X6

      UniProtKB/TrEMBL
      A0A8V0YVT6

    11. XM_046901002.1 → XP_046756958.1  trinucleotide repeat-containing gene 6A protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z268

    12. XM_046901005.1 → XP_046756961.1  trinucleotide repeat-containing gene 6A protein isoform X4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6816250..6876347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927605.1 → XP_046783561.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    2. XM_046927607.1 → XP_046783563.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    3. XM_046927609.1 → XP_046783565.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    4. XM_046927604.1 → XP_046783560.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    5. XM_046927606.1 → XP_046783562.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    6. XM_046927608.1 → XP_046783564.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    7. XM_046927610.1 → XP_046783566.1  trinucleotide repeat-containing gene 6A protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0YVT6

    8. XM_046927601.1 → XP_046783557.1  trinucleotide repeat-containing gene 6A protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z268

    9. XM_046927602.1 → XP_046783558.1  trinucleotide repeat-containing gene 6A protein isoform X3

      UniProtKB/TrEMBL
      A0A8V0YVR7

    10. XM_040683312.2 → XP_040539246.2  trinucleotide repeat-containing gene 6A protein isoform X6

      UniProtKB/TrEMBL
      A0A8V0YVT6

    11. XM_046927600.1 → XP_046783556.1  trinucleotide repeat-containing gene 6A protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z268

    12. XM_046927603.1 → XP_046783559.1  trinucleotide repeat-containing gene 6A protein isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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