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    ATG13 autophagy related 13 [ Gallus gallus (chicken) ]

    Gene ID: 423192, updated on 3-Dec-2024

    Summary

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    Symbol
    ATG13provided by CGNC
    Full Name
    autophagy related 13provided by CGNC
    Primary source
    CGNC:6324
    See related
    Ensembl:ENSGALG00010023064
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ATG13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (23014067..23036770, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (22981660..23004366, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene coagulation factor II, thrombin Neighboring gene Rho GTPase activating protein 1 Neighboring gene harbinger transposase derived 1 Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene cholinergic receptor muscarinic 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Atg13 and FIP200 act independently of Ulk1 and Ulk2 in autophagy induction. Alers S, et al. Autophagy, 2011 Dec. PMID 22024743, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • KIAA0652

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 13
    Names
    ATG13 autophagy related 13 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23014067..23036770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942523.1 → XP_046798479.1  autophagy-related protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR89

    2. XM_015287234.4 → XP_015142720.1  autophagy-related protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR89
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    3. XM_025151379.3 → XP_025007147.1  autophagy-related protein 13 isoform X11

      UniProtKB/TrEMBL
      A0A8V0ZR89
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    4. XM_025151378.3 → XP_025007146.1  autophagy-related protein 13 isoform X9

      UniProtKB/TrEMBL
      A0A8V0ZT69
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    5. XM_015287229.4 → XP_015142715.1  autophagy-related protein 13 isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZU68, A0A8V0ZU93
      Related
      ENSGALP00010034012.1, ENSGALT00010056194.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    6. XM_015287233.4 → XP_015142719.1  autophagy-related protein 13 isoform X12

      UniProtKB/TrEMBL
      A0A8V0ZR89
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    7. XM_040702023.2 → XP_040557957.1  autophagy-related protein 13 isoform X13

      UniProtKB/TrEMBL
      A0A8V0ZT69

    8. XM_015287232.4 → XP_015142718.1  autophagy-related protein 13 isoform X10

      UniProtKB/TrEMBL
      A0A8V0ZR89, E1BQS0
      Related
      ENSGALP00010034029.1, ENSGALT00010056216.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    9. XM_015287231.4 → XP_015142717.1  autophagy-related protein 13 isoform X8

      UniProtKB/TrEMBL
      A0A8V0ZR89
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    10. XM_015287228.4 → XP_015142714.1  autophagy-related protein 13 isoform X5

      UniProtKB/TrEMBL
      A0A3Q2U2X5, A0A8V0ZT69
      Related
      ENSGALP00010034020.1, ENSGALT00010056203.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    11. XM_015287226.4 → XP_015142712.1  autophagy-related protein 13 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZU93
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    12. XM_015287227.4 → XP_015142713.1  autophagy-related protein 13 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZR64, A0A8V0ZU93
      Related
      ENSGALP00010034001.1, ENSGALT00010056183.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    13. XM_015287230.4 → XP_015142716.1  autophagy-related protein 13 isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZT69, A0A8V0ZU38
      Related
      ENSGALP00010033987.1, ENSGALT00010056168.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    14. XM_015287222.4 → XP_015142708.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93
      Related
      ENSGALP00010034032.1, ENSGALT00010056220.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    15. XM_015287223.4 → XP_015142709.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      22981660..23004366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046919534.1 → XP_046775490.1  autophagy-related protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR89

    2. XM_046919531.1 → XP_046775487.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93

    3. XM_040673691.2 → XP_040529625.1  autophagy-related protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR89
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    4. XM_040673678.2 → XP_040529612.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    5. XM_046919533.1 → XP_046775489.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93

    6. XM_040673679.2 → XP_040529613.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZU93
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13
    Nucleotide Protein Strain
    Heading Accession and Version

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