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    LOC426897 keratin, type II cuticular Hb4-like [ Gallus gallus (chicken) ]

    Gene ID: 426897, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC426897provided by CGNC
    Full Name
    keratin, type II cuticular Hb4-likeprovided by CGNC
    Primary source
    CGNC:52927
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See LOC426897 in Genome Data Viewer
    Location:
    chromosome: 34
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (2069338..2073226)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (1917971..1921855)

    Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene keratin 6A Neighboring gene uncharacterized LOC112530948 Neighboring gene keratin 75 Neighboring gene keratin 7 Neighboring gene BCDIN3 domain containing RNA methyltransferase Neighboring gene keratin 80

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of skin epidermis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intermediate filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in keratinization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    keratin, type II cytoskeletal cochleal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2069338..2073226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015300378.3 → XP_015155864.3  keratin, type II cytoskeletal cochleal isoform X1

      Conserved Domains (1) summary
      pfam00038
      Location:4 → 315
      Filament; Intermediate filament protein

    2. XM_424505.7 → XP_424505.6  keratin, type II cytoskeletal cochleal isoform X2

      Conserved Domains (1) summary
      pfam00038
      Location:4 → 315
      Filament; Intermediate filament protein

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1917971..1921855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040693807.1 → XP_040549741.1  keratin, type II cytoskeletal cochleal isoform X1

      Conserved Domains (1) summary
      pfam00038
      Location:4 → 315
      Filament; Intermediate filament protein

    2. XM_040693808.1 → XP_040549742.1  keratin, type II cytoskeletal cochleal isoform X2

      Conserved Domains (1) summary
      pfam00038
      Location:4 → 315
      Filament; Intermediate filament protein
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials