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    TTC7B tetratricopeptide repeat domain 7B [ Gallus gallus (chicken) ]

    Gene ID: 423407, updated on 3-Dec-2024

    Summary

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    Symbol
    TTC7Bprovided by CGNC
    Full Name
    tetratricopeptide repeat domain 7Bprovided by CGNC
    Primary source
    CGNC:8116
    See related
    Ensembl:ENSGALG00010017687
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TTC7B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (43504248..43624885, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (43467861..43593708, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418018 Neighboring gene uncharacterized LOC107053531 Neighboring gene uncharacterized LOC107053532 Neighboring gene ribosomal protein S6 kinase A5 Neighboring gene C14orf159 homolog Neighboring gene G protein-coupled receptor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 7B
    Names
    tetratricopeptide repeat protein 7 like-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006484.4 → NP_001006484.2  tetratricopeptide repeat protein 7B

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000215
      UniProtKB/TrEMBL
      A0A1D5PD03, A0A8V0Z2Y3
      Related
      ENSGALP00010025272.1, ENSGALT00010042782.1
      Conserved Domains (5) summary
      sd00008
      Location:431 → 459
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:730 → 758
      TPR; TPR repeat [structural motif]
      pfam07719
      Location:731 → 763
      TPR_2; Tetratricopeptide repeat
      pfam13414
      Location:731 → 794
      TPR_11; TPR repeat
      pfam13432
      Location:769 → 832
      TPR_16; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      43504248..43624885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040701037.2 → XP_040556971.1  tetratricopeptide repeat protein 7B isoform X2

      UniProtKB/TrEMBL
      A0A8V0YW02, A0A8V0Z440
      Related
      ENSGALP00010025260.1, ENSGALT00010042770.1
      Conserved Domains (4) summary
      TIGR00990
      Location:686 → 859
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:407 → 849
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:431 → 459
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:747 → 775
      TPR; TPR repeat [structural motif]

    2. XM_040701038.2 → XP_040556972.1  tetratricopeptide repeat protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z2F9, A0A8V0Z2Y3
      Related
      ENSGALP00010025262.1, ENSGALT00010042772.1
      Conserved Domains (3) summary
      TIGR02917
      Location:415 → 840
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439 → 467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:738 → 766
      TPR; TPR repeat [structural motif]

    3. XM_040701036.2 → XP_040556970.1  tetratricopeptide repeat protein 7B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z440
      Conserved Domains (4) summary
      TIGR00990
      Location:694 → 867
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:415 → 857
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439 → 467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:755 → 783
      TPR; TPR repeat [structural motif]

    4. XM_040701039.2 → XP_040556973.1  tetratricopeptide repeat protein 7B isoform X6

      UniProtKB/TrEMBL
      Q5ZIU2
      Conserved Domains (3) summary
      TIGR02917
      Location:415 → 783
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439 → 467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:704 → 732
      TPR; TPR repeat [structural motif]

    5. XM_046941784.1 → XP_046797740.1  tetratricopeptide repeat protein 7B isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z431

    6. XM_040701040.2 → XP_040556974.1  tetratricopeptide repeat protein 7B isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z431
      Related
      ENSGALP00010025258.1, ENSGALT00010042768.1
      Conserved Domains (3) summary
      COG0457
      Location:373 → 627
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00008
      Location:439 → 467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:373 → 399
      TPR; TPR repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      43467861..43593708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918606.1 → XP_046774562.1  tetratricopeptide repeat protein 7B isoform X2

      UniProtKB/TrEMBL
      A0A8V0YW02, A0A8V0Z440

    2. XM_046918607.1 → XP_046774563.1  tetratricopeptide repeat protein 7B isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z2F9, A0A8V0Z2Y3

    3. XM_046918605.1 → XP_046774561.1  tetratricopeptide repeat protein 7B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z440

    4. XM_046918608.1 → XP_046774564.1  tetratricopeptide repeat protein 7B isoform X7

      UniProtKB/TrEMBL
      Q5ZIU2

    5. XM_046918610.1 → XP_046774566.1  tetratricopeptide repeat protein 7B isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z431

    6. XM_046918609.1 → XP_046774565.1  tetratricopeptide repeat protein 7B isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z431
    Nucleotide Protein Strain
    Heading Accession and Version

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