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    CPSF2 cleavage and polyadenylation specific factor 2 [ Gallus gallus (chicken) ]

    Gene ID: 423416, updated on 3-Dec-2024

    Summary

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    Symbol
    CPSF2provided by CGNC
    Full Name
    cleavage and polyadenylation specific factor 2provided by CGNC
    Primary source
    CGNC:8198
    See related
    Ensembl:ENSGALG00010015348
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CPSF2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (44096118..44111006)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (44065819..44080700)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor interactor 11 Neighboring gene ataxin 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene uncharacterized LOC112532582 Neighboring gene uncharacterized LOC121110931

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 2
    Names
    cleavage and polyadenylation specific factor 2, 100kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031208.3 → NP_001026379.2  cleavage and polyadenylation specificity factor subunit 2

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000215
      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9
      Related
      ENSGALP00010021487.1, ENSGALT00010036899.1
      Conserved Domains (4) summary
      smart01027
      Location:243 → 368
      Beta-Casp; Beta-Casp domain
      cd16293
      Location:7 → 204
      CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
      pfam07521
      Location:529 → 591
      RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
      pfam13299
      Location:608 → 779
      CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      44096118..44111006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046941789.1 → XP_046797745.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9

    2. XM_015287453.4 → XP_015142939.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9
      Conserved Domains (4) summary
      smart01027
      Location:243 → 368
      Beta-Casp; Beta-Casp domain
      cd16293
      Location:7 → 204
      CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
      pfam07521
      Location:529 → 591
      RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
      pfam13299
      Location:608 → 779
      CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

    3. XM_015287452.4 → XP_015142938.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9
      Conserved Domains (4) summary
      smart01027
      Location:243 → 368
      Beta-Casp; Beta-Casp domain
      cd16293
      Location:7 → 204
      CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
      pfam07521
      Location:529 → 591
      RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
      pfam13299
      Location:608 → 779
      CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      44065819..44080700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918620.1 → XP_046774576.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9

    2. XM_046918619.1 → XP_046774575.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9

    3. XM_046918618.1 → XP_046774574.1  cleavage and polyadenylation specificity factor subunit 2 isoform X1

      UniProtKB/TrEMBL
      F1NMN0, Q5F3I9
    Nucleotide Protein Strain
    Heading Accession and Version

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