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    SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [ Gallus gallus (chicken) ]

    Gene ID: 396031, updated on 3-Dec-2024

    Summary

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    Official Symbol
    SMARCAL1provided by CGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1provided by CGNC
    Primary source
    CGNC:8719
    See related
    Ensembl:ENSGALG00010019294
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCAL1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (22961308..22996623, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (22881193..22916522, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor binding protein 2 Neighboring gene ribosomal protein L37a Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene uncharacterized LOC124418126 Neighboring gene uncharacterized LOC107053887

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
    XP_015145537.2
    XP_025008251.2
    XP_040532565.1
    XP_040532566.1
    XP_040532567.1
    XP_040532568.1
    XP_040532569.1
    XP_040559810.1
    XP_040559811.1
    XP_046778101.1
    XP_046800074.1
    XP_422070.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      22961308..22996623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025152483.3 → XP_025008251.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    2. XM_422070.8 → XP_422070.4  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Related
      ENSGALP00010027783.1, ENSGALT00010046654.1
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    3. XM_046944118.1 → XP_046800074.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0

    4. XM_040703877.2 → XP_040559811.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    5. XM_015290051.4 → XP_015145537.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    6. XM_040703876.2 → XP_040559810.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      22881193..22916522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040676635.2 → XP_040532569.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    2. XM_040676631.2 → XP_040532565.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    3. XM_046922145.1 → XP_046778101.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0

    4. XM_040676634.2 → XP_040532568.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    5. XM_040676632.2 → XP_040532566.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    6. XM_040676633.2 → XP_040532567.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9C0
      Conserved Domains (2) summary
      COG0553
      Location:419 → 895
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:460 → 669
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
    Nucleotide Protein
    Heading Accession and Version

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