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    TYW1 tRNA-yW synthesizing protein 1 homolog [ Gallus gallus (chicken) ]

    Gene ID: 417478, updated on 3-Dec-2024

    Summary

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    Symbol
    TYW1provided by CGNC
    Full Name
    tRNA-yW synthesizing protein 1 homologprovided by CGNC
    Primary source
    CGNC:50523
    See related
    Ensembl:ENSGALG00010029171
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See TYW1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (1337194..1418510)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (1067020..1148094)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417305 Neighboring gene septin 4 Neighboring gene coiled-coil domain containing 183 Neighboring gene SBDS ribosome maturation factor Neighboring gene calneuron 1 Neighboring gene Williams-Beuren syndrome chromosome region 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in wybutosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA wybutosine-synthesizing protein 1 homolog; S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1
    Names
    tRNA wybutosine-synthesizing protein 1 homolog; S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1337194..1418510
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025142014.3 → XP_024997782.3  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AIG9, A0A8V1AKM0
      Related
      ENSGALP00010043183.1, ENSGALT00010070492.1

    2. XM_046902437.1 → XP_046758393.1  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIG9

    3. XM_015295937.4 → XP_015151423.2  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIG9
      Related
      ENSGALP00010043184.1, ENSGALT00010070493.1
      Conserved Domains (2) summary
      PRK13762
      Location:360 → 672
      PRK13762; 4-demethylwyosine synthase TYW1
      cl06868
      Location:72 → 250
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1067020..1148094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040687603.2 → XP_040543537.2  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AIG9

    2. XM_046930204.1 → XP_046786160.1  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIG9

    3. XM_040687604.2 → XP_040543538.1  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIG9
      Conserved Domains (2) summary
      PRK13762
      Location:360 → 672
      PRK13762; 4-demethylwyosine synthase TYW1
      cl06868
      Location:72 → 250
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
    Nucleotide Protein Strain
    Heading Accession and Version

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