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    CASC3 cancer susceptibility candidate 3 [ Gallus gallus (chicken) ]

    Gene ID: 426135, updated on 3-Dec-2024

    Summary

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    Symbol
    CASC3provided by CGNC
    Full Name
    cancer susceptibility candidate 3provided by CGNC
    Primary source
    CGNC:10149
    See related
    Ensembl:ENSGALG00010024504
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CASC3 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (4360690..4369978)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (5522754..5532045)

    Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene male specific lethal 1 homolog Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene microRNA mir-12255 Neighboring gene WAS/WASL interacting protein family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASC3; LOW QUALITY PROTEIN: protein CASC3
    Names
    CASC3, exon junction complex subunit
    cancer susceptibility 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4360690..4369978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015299551.4 → XP_015155037.3  LOW QUALITY PROTEIN: protein CASC3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZST0
      Related
      ENSGALP00010036558.1, ENSGALT00010059798.1
      Conserved Domains (1) summary
      smart01044
      Location:150 → 252
      Btz; CASC3/Barentsz eIF4AIII binding

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5522754..5532045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046933439.1 → XP_046789395.1  protein CASC3 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZXX2

    2. XM_046933438.1 → XP_046789394.1  protein CASC3 isoform X3

      UniProtKB/TrEMBL
      A0A8V1A026

    3. XM_040691810.2 → XP_040547744.1  protein CASC3 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZST0
      Conserved Domains (1) summary
      smart01044
      Location:150 → 252
      Btz; CASC3/Barentsz eIF4AIII binding

    4. XM_046933440.1 → XP_046789396.1  protein CASC3 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZST0

    5. XM_046933441.1 → XP_046789397.1  protein CASC3 isoform X6

      UniProtKB/TrEMBL
      A0A8V1A026

    6. XM_040691811.2 → XP_040547745.1  protein CASC3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZST0
      Conserved Domains (1) summary
      smart01044
      Location:150 → 252
      Btz; CASC3/Barentsz eIF4AIII binding
    Nucleotide Protein
    Heading Accession and Version

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