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    PSIP1 PC4 and SFRS1 interacting protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 431605, updated on 3-Dec-2024

    Summary

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    Symbol
    PSIP1provided by CGNC
    Full Name
    PC4 and SFRS1 interacting protein 1provided by CGNC
    Primary source
    CGNC:54295
    See related
    Ensembl:ENSGALG00010014035
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PSIP2
    Orthologs
    human mouse all
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    Genomic context

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    See PSIP1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (32379495..32414902, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (32379495..32414902, complement)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene FRAS1 related extracellular matrix 1 Neighboring gene uncharacterized LOC121108328 Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene ADP-ribosylation factor-like protein 8A pseudogene Neighboring gene coiled-coil domain containing 171 Neighboring gene uncharacterized LOC112532140 Neighboring gene uncharacterized LOC101748308

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LEDGF: survival of embryonic chick retinal photoreceptor cells. Nakamura M, et al. Invest Ophthalmol Vis Sci, 2000 Apr. PMID 10752956
    2. Identification of an evolutionarily conserved domain in human lens epithelium-derived growth factor/transcriptional co-activator p75 (LEDGF/p75) that binds HIV-1 integrase. Cherepanov P, et al. J Biol Chem, 2004 Nov 19. PMID 15371438
    3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lens epithelium-derived growth factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031610.3 → NP_001026781.3  lens epithelium-derived growth factor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000092
      UniProtKB/Swiss-Prot
      Q5XXA9
      UniProtKB/TrEMBL
      A0A8V0YUB5
      Related
      ENSGALP00010019833.1, ENSGALT00010033681.1
      Conserved Domains (2) summary
      cd05834
      Location:3 → 87
      HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
      PTZ00121
      Location:107 → 579
      PTZ00121; MAEBL; Provisional

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      32379495..32414902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046905477.1 → XP_046761433.1  lens epithelium-derived growth factor isoform X2

      UniProtKB/Swiss-Prot
      Q5XXA9
      UniProtKB/TrEMBL
      A0A8V0YM57
      Related
      ENSGALP00010019836.1, ENSGALT00010033687.1

    2. XM_046905476.1 → XP_046761432.1  lens epithelium-derived growth factor isoform X1

      UniProtKB/Swiss-Prot
      Q5XXA9
      UniProtKB/TrEMBL
      A0A8V0YUB5

    3. XM_046905478.1 → XP_046761434.1  lens epithelium-derived growth factor isoform X3

      UniProtKB/Swiss-Prot
      Q5XXA9

    RNA

    1. XR_005842642.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      32379495..32414902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046935345.1 → XP_046791301.1  lens epithelium-derived growth factor isoform X2

      UniProtKB/Swiss-Prot
      Q5XXA9
      UniProtKB/TrEMBL
      A0A8V0YM57

    2. XM_046935344.1 → XP_046791300.1  lens epithelium-derived growth factor isoform X1

      UniProtKB/Swiss-Prot
      Q5XXA9
      UniProtKB/TrEMBL
      A0A8V0YUB5

    3. XM_046935346.1 → XP_046791302.1  lens epithelium-derived growth factor isoform X3

      UniProtKB/Swiss-Prot
      Q5XXA9

    RNA

    1. XR_006937437.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XXA9.1 GenPept UniProtKB/Swiss-Prot:Q5XXA9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials