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    C06G1.1 Lipid-binding serum glycoprotein C-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181720, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C06G1.1
    Official Full Name
    Lipid-binding serum glycoprotein C-terminal domain-containing protein
    Primary source
    WormBase:WBGene00015545
    Locus tag
    CELE_C06G1.1
    See related
    AllianceGenome:WB:WBGene00015545
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable lipid binding activity. Predicted to be active in extracellular space. Is expressed in excretory system; hypodermis; and vulval muscle. Orthologous to human BPIFC (BPI fold containing family C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C06G1.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    12
    Sequence:
    Chromosome: X; NC_003284.9 (16633352..16637632)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-His Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Lipid-binding serum glycoprotein C-terminal domain-containing protein
    NP_001123098.1
    • Confirmed by transcript evidence
    NP_510689.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      16633352..16637632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129626.5 → NP_001123098.1  Lipid-binding serum glycoprotein C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123098.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WFJ7
      Conserved Domains (2) summary
      smart00329
      Location:286 → 494
      BPI2; BPI/LBP/CETP C-terminal domain
      cl00188
      Location:33 → 252
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

    2. NM_078288.9 → NP_510689.1  Lipid-binding serum glycoprotein C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510689.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYI4
      Conserved Domains (2) summary
      smart00329
      Location:284 → 492
      BPI2; BPI/LBP/CETP C-terminal domain
      cl00188
      Location:33 → 252
      BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...
    Nucleotide Protein
    Heading Accession and Version

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