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    F33D11.1 LIM zinc-binding domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185224, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F33D11.1
    Official Full Name
    LIM zinc-binding domain-containing protein
    Primary source
    WormBase:WBGene00018000
    Locus tag
    CELE_F33D11.1
    See related
    AllianceGenome:WB:WBGene00018000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F33D11.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (5852023..5852962)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene WH2 domain-containing protein Neighboring gene Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Pro Neighboring gene Neuropeptide Neighboring gene Chitin synthase;GPI transamidase component GAA1;GlycosylPhosphatidylinositol Anchor Attachment 1 homolog Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The amyotrophic lateral sclerosis 8 protein VAPB is cleaved, secreted, and acts as a ligand for Eph receptors. Tsuda H, et al. Cell, 2008 Jun 13. PMID 18555774, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Study shows that the MSP domains of VAP protein, VPR-1 are cleaved and secreted ligands for Eph receptors
      Title: The amyotrophic lateral sclerosis 8 protein VAPB is cleaved, secreted, and acts as a ligand for Eph receptors.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LIM zinc-binding domain-containing protein
    NP_491698.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5852023..5852962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059297.3 → NP_491698.1  LIM zinc-binding domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491698.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44778
      Conserved Domains (1) summary
      cl02475
      Location:65 → 97
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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