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    H17B01.2 Collagen alpha-5(IV) chain [ Caenorhabditis elegans ]

    Gene ID: 186749, updated on 9-Dec-2024

    Summary

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    Official Symbol
    H17B01.2
    Official Full Name
    Collagen alpha-5(IV) chain
    Primary source
    WormBase:WBGene00000646
    Locus tag
    CELE_H17B01.2
    See related
    AllianceGenome:WB:WBGene00000646
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See H17B01.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (1470565..1472260)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene CLIP domain-containing serine protease Neighboring gene Neuropeptide-Like Protein Neighboring gene tRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Collagen alpha-5(IV) chain
    NP_493978.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1470565..1472260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061577.2 → NP_493978.2  Collagen alpha-5(IV) chain [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61209
      Conserved Domains (1) summary
      PRK14950
      Location:128 → 195
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein
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