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    Y55F3AM.5 SPIN90/Ldb17 leucine-rich domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190307, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y55F3AM.5
    Official Full Name
    SPIN90/Ldb17 leucine-rich domain-containing protein
    Primary source
    WormBase:WBGene00021923
    Locus tag
    CELE_Y55F3AM.5
    See related
    AllianceGenome:WB:WBGene00021923
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable Arp2/3 complex binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y55F3AM.5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (999214..1003626)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene C2H2-type domain-containing protein Neighboring gene E3 ubiquitin-protein ligase makorin Neighboring gene Mitochondrial inner membrane protease subunit 2;Peptidase S26 domain-containing protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase Neighboring gene Ubiquitin-like-conjugating enzyme ATG3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables Arp2/3 complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SPIN90/Ldb17 leucine-rich domain-containing protein
    NP_500021.4
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      999214..1003626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067620.6 → NP_500021.4  SPIN90/Ldb17 leucine-rich domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500021.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N372
    Nucleotide Protein
    Heading Accession and Version

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