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    E230001N04Rik RIKEN cDNA E230001N04 gene [ Mus musculus (house mouse) ]

    Gene ID: 320187, updated on 9-Dec-2024

    Summary

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    Official Symbol
    E230001N04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E230001N04 geneprovided by MGI
    Primary source
    MGI:MGI:2443549
    See related
    AllianceGenome:MGI:2443549
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lnc956
    Summary
    Acts upstream of or within several processes, including maintenance of protein location in cell; regulation of transcription by RNA polymerase II; and stem cell differentiation. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See E230001N04Rik in Genome Data Viewer
    Location:
    17 A3.3; 17 14.73 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (28740816..28743516)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (28522656..28525888)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42209 Neighboring gene TUB like protein 1 Neighboring gene STARR-seq mESC enhancer starr_42210 Neighboring gene FK506 binding protein 5 Neighboring gene predicted gene, 22146 Neighboring gene STARR-positive B cell enhancer ABC_E10942 Neighboring gene predicted gene, 41506 Neighboring gene STARR-seq mESC enhancer starr_42217 Neighboring gene armadillo repeat containing 12 Neighboring gene colipase-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lnc956-TRIM28-HSP90B1 complex on replication forks promotes CMG helicase retention to ensure stem cell genomic stability and embryogenesis. Zhang W, et al. Sci Adv, 2023 Jan 27. PMID 36706191, Free PMC Article
    2. Lnc956 regulates mouse embryonic stem cell differentiation in response to DNA damage in a p53-independent pathway. Ma H, et al. Sci Adv, 2023 Jan 20. PMID 36662856, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within maintenance of protein location in cell IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stem cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      28740816..28743516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_385504.5 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177094.2: Suppressed sequence

      Description
      NM_177094.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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