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    Cd101 CD101 antigen [ Mus musculus (house mouse) ]

    Gene ID: 630146, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cd101provided by MGI
    Official Full Name
    CD101 antigenprovided by MGI
    Primary source
    MGI:MGI:2685862
    See related
    Ensembl:ENSMUSG00000086564 AllianceGenome:MGI:2685862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm734; Igsf2; Gm1016; EWI-101
    Summary
    Acts upstream of or within positive regulation of myeloid leukocyte differentiation. Predicted to be active in membrane. Orthologous to human CD101 (CD101 molecule). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in spleen adult (RPKM 1.1), lung adult (RPKM 0.8) and 12 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cd101 in Genome Data Viewer
    Location:
    3 F2.2; 3 43.9 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (100899505..100936869, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (100992189..101029553, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E232 Neighboring gene tripartite motif-containing 45 Neighboring gene STARR-positive B cell enhancer ABC_E2678 Neighboring gene transcription termination factor, RNA polymerase II Neighboring gene STARR-seq mESC enhancer starr_08505 Neighboring gene prostaglandin F2 receptor negative regulator Neighboring gene STARR-seq mESC enhancer starr_08514 Neighboring gene STARR-seq mESC enhancer starr_08516 Neighboring gene STARR-seq mESC enhancer starr_08517 Neighboring gene STARR-seq mESC enhancer starr_08518 Neighboring gene nuclear import 7 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    immunoglobulin superfamily member 2
    Names
    EWI immunoglobulin subfamily member EWI-101
    glu-Trp-Ile EWI motif-containing protein 101
    immunoglobulin superfamily, member 2
    leukocyte surface protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167906.2NP_001161378.1  immunoglobulin superfamily member 2 precursor

      See identical proteins and their annotated locations for NP_001161378.1

      Status: VALIDATED

      Source sequence(s)
      AL669872
      Consensus CDS
      CCDS51020.1
      UniProtKB/Swiss-Prot
      A8E0Y8, A8E0Y9
      UniProtKB/TrEMBL
      A0A0B4J1L8
      Related
      ENSMUSP00000116643.3, ENSMUST00000147399.9
      Conserved Domains (5) summary
      cd00096
      Location:300391
      Ig; Immunoglobulin domain
      smart00410
      Location:29142
      IG_like; Immunoglobulin like
      pfam00047
      Location:421515
      ig; Immunoglobulin domain
      pfam07686
      Location:26143
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:831927
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      100899505..100936869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001099332.2: Suppressed sequence

      Description
      NM_001099332.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.