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    rsa4 ribosome biogenesis protein Rsa4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539380, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rsa4
    Official Full Name
    ribosome biogenesis protein Rsa4
    Primary source
    PomBase:SPCC18.05c
    Locus tag
    SPOM_SPCC18.05C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rsa4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003421.2 (1962945..1964815, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene shuttle craft like transcriptional regulator Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene exocyst complex subunit Exo5-like, F-box protein Pof6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CCR4-Not complex CAF1 family ribonuclease subunit 7/8 Neighboring gene oligosaccharyltransferase complex zeta subunit Ost5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Potent, Reversible, and Specific Chemical Inhibitors of Eukaryotic Ribosome Biogenesis. Kawashima SA, et al. Cell, 2016 Oct 6. PMID 27667686, Free PMC Article
    2. Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA. Zhang K, et al. Science, 2011 Mar 25. PMID 21436456, Free PMC Article
    3. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    ribosome biogenesis protein Rsa4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1962945..1964815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023375.3 → NP_588384.1  ribosome biogenesis protein Rsa4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588384.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74855
      Conserved Domains (5) summary
      smart00320
      Location:125 → 163
      WD40; WD40 repeats
      COG2319
      Location:127 → 501
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:169 → 501
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08154
      Location:31 → 93
      NLE; NLE (NUC135) domain
      sd00039
      Location:137 → 175
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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