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    vps36 ESCRT II complex subunit Vps36 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540981, updated on 18-Sep-2024

    Summary

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    Official Symbol
    vps36
    Official Full Name
    ESCRT II complex subunit Vps36
    Primary source
    PomBase:SPBC3B9.09
    Locus tag
    SPOM_SPBC3B9.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See vps36 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (4003312..4004866)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase I complex subunit Rpa43 Neighboring gene protein mago nashi Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SNARE protein Vti1 Neighboring gene DASH complex subunit Dad4 Neighboring gene cleavage and polyadenylation specificity factor complex subunit Ctf1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A complex network of interactions between mitotic kinases, phosphatases and ESCRT proteins regulates septation and membrane trafficking in S. pombe. Bhutta MS, et al. PLoS One, 2014. PMID 25356547, Free PMC Article
    2. Essential roles of class E Vps proteins for sorting into multivesicular bodies in Schizosaccharomyces pombe. Iwaki T, et al. Microbiology (Reading), 2007 Aug. PMID 17660439, Free PMC Article
    3. Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Beltrao P, et al. PLoS Biol, 2009 Jun 16. PMID 19547744, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT II complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in Golgi apparatus HDA PubMed 
    is_active_in cytoplasm HDA PubMed 
    is_active_in late endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ESCRT II complex subunit Vps36

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4003312..4004866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022589.3 → NP_596667.1  ESCRT II complex subunit Vps36 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596667.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O43038
      Conserved Domains (5) summary
      smart00547
      Location:141 → 160
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:99 → 119
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam04157
      Location:221 → 437
      EAP30; EAP30/Vps36 family
      pfam16988
      Location:99 → 129
      Vps36-NZF-N; Vacuolar protein sorting 36 NZF-N zinc-finger domain
      cl17171
      Location:2 → 103
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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