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    jmj3 Lid2 complex histone demethylase H3-K36 subunit Jmj3 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540780, updated on 18-Sep-2024

    Summary

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    Official Symbol
    jmj3
    Official Full Name
    Lid2 complex histone demethylase H3-K36 subunit Jmj3
    Primary source
    PomBase:SPBC83.07
    Locus tag
    SPOM_SPBC83.07
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    kdm4
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    Genomic context

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    See jmj3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (1521197..1523695)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene anaphase-promoting complex platform subcomplex scaffold subunit Apc15 Neighboring gene RNA-binding protein Yme2 Neighboring gene ncRNA Neighboring gene mitochondrial 54S ribosomal protein bL36m Neighboring gene ncRNA Neighboring gene chaperone, AAA family ATPase Rvb2 Neighboring gene ncRNA Neighboring gene U5 snRNP complex subunit LIN1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Li F, et al. Cell, 2008 Oct 17. PMID 18957202, Free PMC Article
    2. High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. Roguev A, et al. J Biol Chem, 2003 Mar 7. PMID 12488447
    3. A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Roguev A, et al. Mol Cell Proteomics, 2004 Feb. PMID 14617822
    4. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone H3K9 demethylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Lid2 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Lid2 complex histone demethylase H3-K36 subunit Jmj3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1521197..1523695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021533.3 → NP_595639.1  Lid2 complex histone demethylase H3-K36 subunit Jmj3 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595639.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94691
      Conserved Domains (2) summary
      smart00545
      Location:33 → 74
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:200 → 316
      JmjC; JmjC domain, hydroxylase
    Nucleotide Protein
    Heading Accession and Version

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