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    mde5 alpha-amylase [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 3361499, updated on 18-Sep-2024

    Summary

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    Official Symbol
    mde5
    Official Full Name
    alpha-amylase
    Primary source
    PomBase:SPAC25H1.09
    Locus tag
    SPOM_SPAC25H1.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    meu30; SPAC4A8.01
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    Genomic context

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    See mde5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2538442..2540081)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene protein Emc1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Sqt1 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene mitochondrial serine/threonine protein phosphatase PP2C catalytic subunit Ptc4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of fungal GPI proteins. De Groot PW, et al. Yeast, 2003 Jul 15. PMID 12845604
    2. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
    3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
    4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding NAS
    Non-traceable Author Statement
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2538442..2540081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001356068.2 → NP_001343001.1  alpha-amylase [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O14154, Q874R5, Q96WR6
      Conserved Domains (2) summary
      cd11319
      Location:26 → 396
      AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
      pfam09260
      Location:410 → 488
      DUF1966; Domain of unknown function (DUF1966)
    Nucleotide Protein
    Heading Accession and Version

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