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    sec231 COPII cargo receptor subunit Sec23a [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538699, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sec231
    Official Full Name
    COPII cargo receptor subunit Sec23a
    Primary source
    PomBase:SPCC31H12.07
    Locus tag
    SPOM_SPCC31H12.07
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    sec23a; SPCC5E4.01
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    Genomic context

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    See sec231 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003421.2 (634267..636996)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mug111 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CCR4-Not complex subunit Ccr4 Neighboring gene ncRNA Neighboring gene transcription initiation factor TFIID subunit 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The fission yeast FLCN/FNIP complex augments TORC1 repression or activation in response to amino acid (AA) availability. Calvo IA, et al. iScience, 2021 Nov 19. PMID 34805795, Free PMC Article
    2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables zinc ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in intracellular protein transport IC
    Inferred by Curator
    more info
    		  
    involved_in reticulophagy ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of COPII vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum exit site IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    COPII cargo receptor subunit Sec23a

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      634267..636996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022892.3 → NP_587900.1  COPII cargo receptor subunit Sec23a [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587900.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74873
      Conserved Domains (6) summary
      cd11287
      Location:604 → 725
      Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
      COG5047
      Location:1 → 759
      SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
      cd01478
      Location:120 → 384
      Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
      pfam04810
      Location:53 → 91
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:526 → 609
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:397 → 500
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials