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    rqt4 transcription coactivator Rqt4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542431, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rqt4
    Official Full Name
    transcription coactivator Rqt4
    Primary source
    PomBase:SPAC1A6.01c
    Locus tag
    SPOM_SPAC1A6.01C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC23C4.20c
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    Genomic context

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    See rqt4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (1066192..1068678, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DSIF transcription elongation factor complex subunit Spt5 Neighboring gene ncRNA Neighboring gene WD repeat-containing protein Neighboring gene ncRNA Neighboring gene lysophospholipase Plb3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel trigger complex that facilitates ribosome-associated quality control in mammalian cells. Hashimoto S, et al. Sci Rep, 2020 Feb 25. PMID 32099016, Free PMC Article
    2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables zinc ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rescue of stalled ribosome NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    part_of RQC-trigger complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transcription coactivator Rqt4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1066192..1068678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018588.3 → NP_593192.1  transcription coactivator Rqt4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593192.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13855, Q9UTB9
      Conserved Domains (1) summary
      pfam06221
      Location:192 → 244
      zf-C2HC5; Putative zinc finger motif, C2HC5-type
    Nucleotide Protein
    Heading Accession and Version

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