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    srp40 nucleocytoplasmic transport chaperone Srp40 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539687, updated on 18-Sep-2024

    Summary

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    Official Symbol
    srp40
    Official Full Name
    nucleocytoplasmic transport chaperone Srp40
    Primary source
    PomBase:SPBC1711.05
    Locus tag
    SPOM_SPBC1711.05
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See srp40 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (2141259..2142836)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Emc3 Neighboring gene ncRNA Neighboring gene methylenetetrahydrofolate reductase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S ribosomal protein uL4 Neighboring gene mitochondrial 54S ribosomal protein bL31m

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Roberts-Galbraith RH, et al. Mol Cell, 2010 Jul 9. PMID 20603077, Free PMC Article
    2. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article
    3. Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis. Snaith HA, et al. J Cell Sci, 2011 Jul 1. PMID 21652630, Free PMC Article
    4. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
    5. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport ISM
    Inferred from Sequence Model
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nucleocytoplasmic transport chaperone Srp40

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2141259..2142836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021784.3 → NP_595878.1  nucleocytoplasmic transport chaperone Srp40 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595878.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P785
      Conserved Domains (2) summary
      smart00667
      Location:7 → 38
      LisH; Lissencephaly type-1-like homology motif
      pfam05022
      Location:381 → 445
      SRP40_C; SRP40, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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