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    dbr1 RNA lariat debranching enzyme Dbr1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542277, updated on 3-Dec-2024

    Summary

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    Official Symbol
    dbr1
    Official Full Name
    RNA lariat debranching enzyme Dbr1
    Primary source
    PomBase:SPAC17A5.02c
    Locus tag
    SPOM_SPAC17A5.02C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See dbr1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003424.3 (1753774..1755612, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene peroxin-6 Neighboring gene meiotic recombination protein Rec25 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S ribosomal protein L3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Fission Yeast Pre-mRNA-processing Factor 18 (prp18+) Has Intron-specific Splicing Functions with Links to G1-S Cell Cycle Progression. Vijaykrishna N, et al. J Biol Chem, 2016 Dec 30. PMID 27875300, Free PMC Article
    2. Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation. Nam K, et al. Mol Cell Biol, 1997 Feb. PMID 9001235, Free PMC Article
    3. Early splicing functions of fission yeast Prp16 and its unexpected requirement for gene Silencing is governed by intronic features. Vijayakumari D, et al. RNA Biol, 2019 Jun. PMID 30810475, Free PMC Article
    4. Regulation of Cdc2p and Cdc13p is required for cell cycle arrest induced by defective RNA splicing in fission yeast. Shimada M, et al. J Biol Chem, 2005 Sep 23. PMID 16049013
    5. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Rallis C, et al. Biol Open, 2014 Feb 15. PMID 24463365, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA lariat debranching enzyme activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA lariat debranching enzyme activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of spliceosomal complex IC
    Inferred by Curator
    more info
    		  

    General protein information

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    Preferred Names
    RNA lariat debranching enzyme Dbr1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1753774..1755612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018903.4 → NP_593470.3  RNA lariat debranching enzyme Dbr1 [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13765, P78964
      UniProtKB/TrEMBL
      A0AAN2H8X1
    Nucleotide Protein
    Heading Accession and Version

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