Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Vmn1r58 vomeronasal 1 receptor 58 [ Mus musculus (house mouse) ]

    Gene ID: 81014, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Vmn1r58provided by MGI
    Official Full Name
    vomeronasal 1 receptor 58provided by MGI
    Primary source
    MGI:MGI:3033473
    See related
    Ensembl:ENSMUSG00000078808 AllianceGenome:MGI:3033473
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V3R4; V1rd4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Vmn1r58 in Genome Data Viewer
    Location:
    7 A1; 7 3.13 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (5411886..5416144, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (5408887..5413145, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 2 Neighboring gene predicted gene, 18757 Neighboring gene galectin like 2 Neighboring gene vomeronasal 1 receptor, pseudogene 39 Neighboring gene STARR-seq mESC enhancer starr_17953 Neighboring gene vomeronasal 1 receptor 59

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A novel family of candidate pheromone receptors in mammals. Pantages E, et al. Neuron, 2000 Dec. PMID 11163270
    2. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
    3. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
    4. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    vomeronasal 1 receptor 58
    Names
    pheromone receptor V3R4
    vomeronasal 1 receptor Vmn1r58
    vomeronasal 1 receptor, D4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030739.2 → NP_109664.2  vomeronasal 1 receptor 58

      See identical proteins and their annotated locations for NP_109664.2

      Status: PROVISIONAL

      Source sequence(s)
      AC127352
      Consensus CDS
      CCDS39747.1
      UniProtKB/TrEMBL
      G3X9U3, Q9EPS8
      Related
      ENSMUSP00000104209.3, ENSMUST00000108569.4
      Conserved Domains (1) summary
      pfam03402
      Location:32 → 281
      V1R; Vomeronasal organ pheromone receptor family, V1R

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      5411886..5416144 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools