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    shd1 Sla1 family protein Shd1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542338, updated on 18-Sep-2024

    Summary

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    Official Symbol
    shd1
    Official Full Name
    Sla1 family protein Shd1
    Primary source
    PomBase:SPAC16E8.01
    Locus tag
    SPOM_SPAC16E8.01
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    sla1
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    Genomic context

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    See shd1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (3499023..3503915)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 40S ribosomal protein uS7 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene fatty acid alpha-oxygenase Mpo1 Neighboring gene glucosamine-phosphate N-acetyltransferase Neighboring gene chorismate mutase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of dip1p reveals a switch in Arp2/3-dependent actin assembly for fission yeast endocytosis. Basu R, et al. Curr Biol, 2011 Jun 7. PMID 21620704, Free PMC Article
    2. Virtual breakdown of the nuclear envelope in fission yeast meiosis. Asakawa H, et al. Curr Biol, 2010 Nov 9. PMID 20970342
    3. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
    4. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
    5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cortical patch assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endocytosis ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of actin filament polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in actin cortical patch IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cell division site HDA PubMed 
    is_active_in cell tip HDA PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Sla1 family protein Shd1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3499023..3503915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019636.3 → NP_594213.1  Sla1 family protein Shd1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594213.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13736
      Conserved Domains (8) summary
      cd09532
      Location:796 → 857
      SAM_SLA1_fungal; SAM domain of SLA1 subfamily
      cd11773
      Location:9 → 75
      SH3_Sla1p_1; First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p
      cd11774
      Location:84 → 134
      SH3_Sla1p_2; Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p
      cd11775
      Location:511 → 565
      SH3_Sla1p_3; Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p
      pfam03983
      Location:641 → 707
      SHD1; SLA1 homology domain 1, SHD1
      pfam08226
      Location:1044 → 1117
      DUF1720; Domain of unknown function (DUF1720)
      cl17171
      Location:353 → 407
      PH-like; Pleckstrin homology-like domain
      cl21508
      Location:939 → 1005
      Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...
    Nucleotide Protein
    Heading Accession and Version

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