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    tri1 CAF1 family ribonuclease [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540515, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tri1
    Official Full Name
    CAF1 family ribonuclease
    Primary source
    PomBase:SPBC29A10.09c
    Locus tag
    SPOM_SPBC29A10.09C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See tri1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (2554177..2556947, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nucleoporin, transmembrane ring glycoprotein subunit Pom152 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 1,3-beta-glucanosyltransferase Gas2 Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Dbl8 Neighboring gene ncRNA Neighboring gene guanyl-nucleotide exchange factor Muk1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi. Pisacane P, et al. Nat Commun, 2017 May 25. PMID 28541282, Free PMC Article
    2. Argonaute and Triman generate dicer-independent priRNAs and mature siRNAs to initiate heterochromatin formation. Marasovic M, et al. Mol Cell, 2013 Oct 24. PMID 24095277
    3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 3'-5'-RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables poly(A)-specific ribonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in priRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in priRNA 3'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated heterochromatin formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in siRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in siRNA 3'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in condensed chromosome, centromeric region EXP
    Inferred from Experiment
    more info
    		 PubMed 
    is_active_in nucleus EXP
    Inferred from Experiment
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CAF1 family ribonuclease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2554177..2556947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021965.3 → NP_596054.1  CAF1 family ribonuclease [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596054.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94386
      Conserved Domains (1) summary
      pfam04857
      Location:3 → 394
      CAF1; CAF1 family ribonuclease
    Nucleotide Protein
    Heading Accession and Version

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