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    srr1 SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540090, updated on 18-Sep-2024

    Summary

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    Official Symbol
    srr1
    Official Full Name
    SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species
    Primary source
    PomBase:SPBC14C8.13
    Locus tag
    SPOM_SPBC14C8.13
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    ber1
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    Genomic context

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    See srr1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (2224976..2228837)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene mitochondrial 54S ribosomal protein bL28m Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase subunit Rpb8 Neighboring gene rRNA processing protein Pol5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene triglyceride lipase-cholesterol esterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere. Mongia P, et al. Commun Biol, 2023 May 26. PMID 37237082, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in DNA replication checkpoint signaling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2224976..2228837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021824.3 → NP_595916.1  SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595916.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O60093
      Conserved Domains (1) summary
      pfam07985
      Location:73 → 124
      SRR1; SRR1
    Nucleotide Protein
    Heading Accession and Version

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