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    MAD2L1 mitotic arrest deficient 2 like 1 [ Homo sapiens (human) ]

    Gene ID: 4085, updated on 27-Nov-2024

    Summary

    Official Symbol
    MAD2L1provided by HGNC
    Official Full Name
    mitotic arrest deficient 2 like 1provided by HGNC
    Primary source
    HGNC:HGNC:6763
    See related
    Ensembl:ENSG00000164109 MIM:601467; AllianceGenome:HGNC:6763
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MAD2; HSMAD2
    Summary
    MAD2L1 is a component of the mitotic spindle assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. MAD2L1 is related to the MAD2L2 gene located on chromosome 1. A MAD2 pseudogene has been mapped to chromosome 14. [provided by RefSeq, Jul 2008]
    Expression
    Broad expression in bone marrow (RPKM 15.9), lymph node (RPKM 15.1) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See MAD2L1 in Genome Data Viewer
    Location:
    4q27
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (120055623..120066848, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (123359722..123370945, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120976778..120988003, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900769 Neighboring gene uncharacterized LOC124900770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21858 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:120987074-120987580 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:120987581-120988086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21860 Neighboring gene MAD2L1 divergent transcript Neighboring gene LTV1 ribosome biogenesis factor pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:121118839-121118995 Neighboring gene secretion associated Ras related GTPase 1A pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.
    EBI GWAS Catalog
    Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
    EBI GWAS Catalog

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Tat tat Activation of the spindle checkpoint proteins MAD2, BUB1, and BUBR1 is necessary for the activity of HIV-1 Tat to induce mitotic arrest and subsequent apoptosis PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    colocalizes_with kinetochore IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in kinetochore IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of mitotic checkpoint complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in mitotic spindle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of mitotic spindle assembly checkpoint MAD1-MAD2 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of nuclear pore nuclear basket IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    mitotic spindle assembly checkpoint protein MAD2A
    Names
    MAD2 (mitotic arrest deficient, yeast, homolog)-like 1
    MAD2 mitotic arrest deficient-like 1
    MAD2-like protein 1
    mitotic arrest deficient 2-like protein 1
    mitotic arrest deficient, yeast, homolog-like 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_002358.4NP_002349.1  mitotic spindle assembly checkpoint protein MAD2A

      See identical proteins and their annotated locations for NP_002349.1

      Status: REVIEWED

      Source sequence(s)
      AA443733, AC097173, AK223433, AK313827, BC000356
      Consensus CDS
      CCDS3715.1
      UniProtKB/Swiss-Prot
      Q13257, Q53F56, Q548X9, Q6IRW7, Q8IZX3
      Related
      ENSP00000296509.5, ENST00000296509.11
      Conserved Domains (1) summary
      pfam02301
      Location:16191
      HORMA; HORMA domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      120055623..120066848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      123359722..123370945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)