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    Cysrt1 cysteine rich tail 1 [ Mus musculus (house mouse) ]

    Gene ID: 67859, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cysrt1provided by MGI
    Official Full Name
    cysteine rich tail 1provided by MGI
    Primary source
    MGI:MGI:1915109
    See related
    Ensembl:ENSMUSG00000036731 AllianceGenome:MGI:1915109
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310002J15Rik
    Summary
    Predicted to enable identical protein binding activity. Predicted to be involved in biological process involved in interaction with symbiont and establishment of skin barrier. Predicted to be located in cornified envelope. Orthologous to human CYSRT1 (cysteine rich tail 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in stomach adult (RPKM 175.0), lung adult (RPKM 24.2) and 1 other tissue See more
    Orthologs
    NEW
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    Genomic context

    See Cysrt1 in Genome Data Viewer
    Location:
    2 A3; 2 17.09 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25128831..25129876, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25238819..25239897, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03963 Neighboring gene solute carrier family 34 (sodium phosphate), member 3 Neighboring gene ring finger protein 224 Neighboring gene ring finger protein 208 Neighboring gene NADPH dependent diflavin oxidoreductase 1 Neighboring gene transmembrane protein 203

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological process involved in interaction with symbiont ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in biological process involved in interaction with symbiont ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in establishment of skin barrier ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in establishment of skin barrier ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in cornified envelope ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cornified envelope ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    cysteine-rich tail protein 1
    Names
    UPF0574 protein C9orf169 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026415.4NP_080691.2  cysteine-rich tail protein 1

      See identical proteins and their annotated locations for NP_080691.2

      Status: VALIDATED

      Source sequence(s)
      AL732309
      Consensus CDS
      CCDS50526.1
      UniProtKB/Swiss-Prot
      Q9D1E4, Q9D7M7
      UniProtKB/TrEMBL
      A0A0A0MQE7
      Related
      ENSMUSP00000045363.4, ENSMUST00000043379.5
      Conserved Domains (1) summary
      pfam10631
      Location:1141
      DUF2477; Protein of unknown function (DUF2477)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      25128831..25129876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)