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    2010308F09Rik RIKEN cDNA 2010308F09 gene [ Mus musculus (house mouse) ]

    Gene ID: 72122, updated on 22-Oct-2024

    Summary

    Official Symbol
    2010308F09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2010308F09 geneprovided by MGI
    Primary source
    MGI:MGI:1919372
    See related
    Ensembl:ENSMUSG00000100714 AllianceGenome:MGI:1919372
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See 2010308F09Rik in Genome Data Viewer
    Location:
    X; X A1.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (13100880..13113972, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (13234641..13247733, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46782 Neighboring gene ribosomal protein L3, pseudogene 1 Neighboring gene LLP homolog, pseudogene 2 Neighboring gene STARR-positive B cell enhancer mm9_chrX:12807869-12808169 Neighboring gene VISTA enhancer mm1613 Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_46787 Neighboring gene DEAD box helicase 3, X-linked Neighboring gene STARR-seq mESC enhancer starr_46788 Neighboring gene chaperonin containing Tcp1, subunit 7 (eta) pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045429.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AK008545, BB648418
      Related
      ENSMUST00000186931.2
    2. NR_045430.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' exon, compared to variant 1.
      Source sequence(s)
      BB648418, BX633603
      Related
      ENSMUST00000304314.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      13100880..13113972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)