U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01153 long intergenic non-protein coding RNA 1153 [ Homo sapiens (human) ]

    Gene ID: 101927889, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC01153provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1153provided by HGNC
    Primary source
    HGNC:HGNC:49495
    See related
    Ensembl:ENSG00000227143 AllianceGenome:HGNC:49495
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC01153 in Genome Data Viewer
    Location:
    10q26.12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (121178537..121185966)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (122074688..122082115)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902516 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:122872407-122873606 Neighboring gene uncharacterized LOC124902515 Neighboring gene uncharacterized LOC105378522 Neighboring gene ribosomal protein L19 pseudogene 16 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:122918427-122919626 Neighboring gene uncharacterized LOC105378523 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10514 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:123048706-123049666 Neighboring gene MPRA-validated peak1116 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:123099460-123100020 Neighboring gene MPRA-validated peak1117 silencer Neighboring gene RN7SK pseudogene 167

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2. Wu Y, et al. Hum Mol Genet, 2014 Feb 15. PMID 24105470, Free PMC Article
    2. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. Fox CS, et al. PLoS Genet, 2012. PMID 22589738, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.
    EBI GWAS Catalog
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      121178537..121185966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_246197.3 RNA Sequence

      Related
      ENST00000429809.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      122074688..122082115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081128.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials