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    VENTXP1 VENT homeobox pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 139538, updated on 10-Dec-2024

    Summary

    Official Symbol
    VENTXP1provided by HGNC
    Official Full Name
    VENT homeobox pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:30900
    See related
    Ensembl:ENSG00000293226 AllianceGenome:HGNC:30900
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT18; NA88A; VENTX2P1
    Summary
    Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008]
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    Genomic context

    See VENTXP1 in Genome Data Viewer
    Location:
    Xp21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (26558337..26561052)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (26145671..26148386)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (26576454..26579169)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene phenazine biosynthesis like protein domain containing pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:26391578-26392777 Neighboring gene FMN2 pseudogene 1 Neighboring gene VENTX pseudogene 8 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:26622679-26622905 Neighboring gene ribosomal protein L7 pseudogene 58 Neighboring gene high mobility group AT-hook 1 pseudogene 1

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
    EBI GWAS Catalog

    General gene information

    Other Names

    • VENT-like homeobox 2 pseudogene 1
    • cancer/testis antigen 18
    • tumor antigen NA88A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001559.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079178
      Related
      ENST00000569334.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      26558337..26561052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      26145671..26148386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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