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    ZNF8-DT ZNF8 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105372482, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ZNF8-DTprovided by HGNC
    Official Full Name
    ZNF8 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55280
    See related
    Ensembl:ENSG00000268516 AllianceGenome:HGNC:55280
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in prostate (RPKM 1.3), skin (RPKM 1.1) and 25 other tissues See more
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    Genomic context

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    See ZNF8-DT in Genome Data Viewer
    Location:
    19q13.43
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (58257273..58278742, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (61353788..61375147, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (58768639..58790108, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372479 Neighboring gene ribosomal protein S15a pseudogene 36 Neighboring gene zinc finger protein 436 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:58740156-58740982 Neighboring gene zinc finger protein 544 Neighboring gene ZNF8-ERVK3-1 readthrough (NMD candidate) Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15182 Neighboring gene zinc finger protein 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15183 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:58816949-58817449 Neighboring gene Sharpr-MPRA regulatory region 7439 Neighboring gene endogenous retrovirus group K3 member 1 Neighboring gene uncharacterized LOC105372480

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • CTD-3138B18.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187489.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915
      Related
      ENST00000597230.5

    2. NR_187490.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    3. NR_187491.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    4. NR_187492.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    5. NR_187493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    6. NR_187494.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    7. NR_187495.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020915

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      58257273..58278742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      61353788..61375147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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