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    LINC01192 long intergenic non-protein coding RNA 1192 [ Homo sapiens (human) ]

    Gene ID: 647107, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01192provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1192provided by HGNC
    Primary source
    HGNC:HGNC:37197
    See related
    Ensembl:ENSG00000241369 AllianceGenome:HGNC:37197
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT64
    Expression
    Restricted expression toward testis (RPKM 1.4) See more
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    Genomic context

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    See LINC01192 in Genome Data Viewer
    Location:
    3q26.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (163177243..163303301, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (165952047..166078098, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (162895031..163021089, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene TOMM22 pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:162316147-162316792 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:162440387-162441348 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66130 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66156 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66196 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66244 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66277 Neighboring gene small nucleolar RNA U13 Neighboring gene ribosomal protein S6 pseudogene 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66341 Neighboring gene uncharacterized LOC105374188 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66379 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66382 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66440 Neighboring gene RNA, U7 small nuclear 82 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. Chen YT, et al. Proc Natl Acad Sci U S A, 2005 May 31. PMID 15905330, Free PMC Article
    2. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • cancer/testis antigen 64 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033945.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA382967, AC112644, BC027488
      Related
      ENST00000470546.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      163177243..163303301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      165952047..166078098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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