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    Tug1 taurine upregulated gene 1 [ Mus musculus (house mouse) ]

    Gene ID: 544752, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tug1provided by MGI
    Official Full Name
    taurine upregulated gene 1provided by MGI
    Primary source
    MGI:MGI:2144114
    See related
    Ensembl:ENSMUSG00000056579 AllianceGenome:MGI:2144114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including mitochondrion organization; photoreceptor cell development; and spermatogenesis. Located in cytoplasm. Is active in nucleus. Is expressed in several structures, including central nervous system; olfactory epithelium; retina; spleen; and testis. Orthologous to human TUG1 (taurine up-regulated 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 12.7), placenta adult (RPKM 11.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tug1 in Genome Data Viewer
    Location:
    11 A1; 11 2.56 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3589313..3599021, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3639785..3648814, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 1 light chain 3 copy 5 pseudogene Neighboring gene predicted gene 11951 Neighboring gene STARR-positive B cell enhancer ABC_E6944 Neighboring gene microrchidia 2A Neighboring gene STARR-seq mESC enhancer starr_28362 Neighboring gene nucleolar and spindle associated protein 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396521.1NP_001383450.1  taurine up-regulated 1

      Status: VALIDATED

      Source sequence(s)
      AL691413
      UniProtKB/Swiss-Prot
      A0A6I8MX38
      UniProtKB/TrEMBL
      A0A8Q0QWN6
      Related
      ENSMUSP00000159371.2, ENSMUST00000193809.2

    RNA

    1. NR_002321.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL691413
      Related
      ENSMUST00000144852.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      3589313..3599021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)