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    Rbm43 RNA binding motif protein 43 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311020, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rbm43provided by RGD
    Official Full Name
    RNA binding motif protein 43provided by RGD
    Primary source
    RGD:1306676
    See related
    EnsemblRapid:ENSRNOG00000077161 AllianceGenome:RGD:1306676
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306676
    Summary
    Predicted to enable RNA binding activity. Orthologous to human RBM43 (RNA binding motif protein 43). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 50.2), Thymus (RPKM 47.8) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Rbm43 in Genome Data Viewer
    Location:
    3q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (56802384..56821371, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (36394431..36404757, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (37434616..37446777, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L29, pseudogene 11 Neighboring gene ribosomal protein L28, pseudogene 9 Neighboring gene chaperonin containing Tcp1, subunit 8 (theta), pseudogene 2 Neighboring gene chaperonin containing Tcp1, subunit 8 (theta), pseudogene 3 Neighboring gene N-myc (and STAT) interactor Neighboring gene lactate dehydrogenase A, pseudogene 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    RNA-binding protein 43
    Names
    rCG37778-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037649.1NP_001032738.1  RNA-binding protein 43

      See identical proteins and their annotated locations for NP_001032738.1

      Status: PROVISIONAL

      Source sequence(s)
      BC107648
      UniProtKB/Swiss-Prot
      Q3B7D9
      UniProtKB/TrEMBL
      A6JF12
      Related
      ENSRNOP00000100189.1, ENSRNOT00000137557.1
      Conserved Domains (1) summary
      cl17169
      Location:1580
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      56802384..56821371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283546.1XP_063139616.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    2. XM_063283542.1XP_063139612.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    3. XM_063283544.1XP_063139614.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    4. XM_063283545.1XP_063139615.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    5. XM_063283541.1XP_063139611.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    6. XM_063283547.1XP_063139617.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12
    7. XM_063283543.1XP_063139613.1  RNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A6JF12