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    Fcrl1 Fc receptor-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680665, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fcrl1provided by RGD
    Official Full Name
    Fc receptor-like 1provided by RGD
    Primary source
    RGD:1589411
    See related
    EnsemblRapid:ENSRNOG00000034230 AllianceGenome:RGD:1589411
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human FCRL1 (Fc receptor like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 99.8) and Thymus (RPKM 9.3) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Fcrl1 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (175107027..175127666)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (172809442..172829780)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (186702311..186724205)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene elongator acetyltransferase complex subunit 4, pseudogene 1 Neighboring gene Cd5 molecule-like Neighboring gene uncharacterized LOC108350053 Neighboring gene Fc receptor-like 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    Fc receptor-like protein 1
    Names
    rCG62545-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402064.1NP_001388993.1  Fc receptor-like protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A1W2Q6J8, A6J605, F1M8T7
      Related
      ENSRNOP00000076297.1, ENSRNOT00000093342.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      175107027..175127666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006232674.5XP_006232736.1  Fc receptor-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006232736.1

      UniProtKB/TrEMBL
      A0A8I6AS51, F1M8T7
      Conserved Domains (2) summary
      smart00410
      Location:23107
      IG_like; Immunoglobulin like
      pfam13927
      Location:111184
      Ig_3; Immunoglobulin domain