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    CG9297 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41688, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG9297provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038181
    Locus tag
    Dmel_CG9297
    See related
    AllianceGenome:FB:FBgn0038181
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG9297
    Summary
    Predicted to be active in collagen-containing extracellular matrix. Is expressed in adult head; adult heart; larval muscle system; and larval somatic muscle cell. Orthologous to human SRL (sarcalumenin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG9297 in Genome Data Viewer
    Location:
    87F13-87F13; 3-54 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (13771495..13779317)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (9597217..9605039)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Chitinase 5 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nutrient sensor CRTC and Sarcalumenin/thinman represent an alternate pathway in cardiac hypertrophy. Dondi C, et al. Cell Rep, 2024 Aug 27. PMID 39093699, Free PMC Article
    2. Mechanisms of intron gain and loss in Drosophila. Yenerall P, et al. BMC Evol Biol, 2011 Dec 19. PMID 22182367, Free PMC Article
    3. Quantitative evaluation of the mitochondrial proteomes of Drosophila melanogaster adapted to extreme oxygen conditions. Yin S, et al. PLoS One, 2013. PMID 24069262, Free PMC Article
    4. Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs. Kern AD, et al. Genome Biol Evol, 2015 Jan 23. PMID 25618141, Free PMC Article
    5. Dynamics of Dark-Fly Genome Under Environmental Selections. Izutsu M, et al. G3 (Bethesda), 2015 Dec 4. PMID 26637434, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    is_active_in collagen-containing extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG9297-PA
    CG9297-PB
    CG9297-PC
    CG9297-PD
    CG9297-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      13771495..13779317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275624.1 → NP_001262553.1  uncharacterized protein Dmel_CG9297, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262553.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494H0, Q8I0D4, Q8MQM4
      Conserved Domains (3) summary
      cd09913
      Location:574 → 813
      EHD; Eps15 homology domain (EHD), C-terminal domain
      sd00002
      Location:167 → 205
      TSP3; TSP3 repeat_long [structural motif]
      pfam16880
      Location:539 → 569
      EHD_N; N-terminal EH-domain containing protein

    2. NM_176497.2 → NP_788674.1  uncharacterized protein Dmel_CG9297, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788674.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494H0, Q8I0D4, Q8MQM4
      Related
      FBpp0082296
      Conserved Domains (3) summary
      cd09913
      Location:574 → 813
      EHD; Eps15 homology domain (EHD), C-terminal domain
      sd00002
      Location:167 → 205
      TSP3; TSP3 repeat_long [structural motif]
      pfam16880
      Location:539 → 569
      EHD_N; N-terminal EH-domain containing protein

    3. NM_176498.2 → NP_788675.1  uncharacterized protein Dmel_CG9297, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788675.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494H0, Q8MQM4, Q9VFR2
      Related
      FBpp0082295
      Conserved Domains (3) summary
      cd09913
      Location:552 → 791
      EHD; Eps15 homology domain (EHD), C-terminal domain
      sd00002
      Location:145 → 183
      TSP3; TSP3 repeat_long [structural motif]
      pfam16880
      Location:517 → 547
      EHD_N; N-terminal EH-domain containing protein

    4. NM_001275625.1 → NP_001262554.1  uncharacterized protein Dmel_CG9297, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262554.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494H0, Q8I0D4, Q8MQM4
      Conserved Domains (3) summary
      cd09913
      Location:574 → 813
      EHD; Eps15 homology domain (EHD), C-terminal domain
      sd00002
      Location:167 → 205
      TSP3; TSP3 repeat_long [structural motif]
      pfam16880
      Location:539 → 569
      EHD_N; N-terminal EH-domain containing protein

    5. NM_001275626.1 → NP_001262555.1  uncharacterized protein Dmel_CG9297, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q494H0, Q8I0D4, Q8MQM4
      Conserved Domains (3) summary
      cd09913
      Location:574 → 813
      EHD; Eps15 homology domain (EHD), C-terminal domain
      sd00002
      Location:167 → 205
      TSP3; TSP3 repeat_long [structural motif]
      pfam16880
      Location:539 → 569
      EHD_N; N-terminal EH-domain containing protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8I0D4 Q8I0D4
    Q8MQM4 Q8MQM4
    Q95RZ1 Q95RZ1
    Q9VFR2 Q9VFR2

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