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    Saf-B Scaffold attachment factor B [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1281879, updated on 22-Jun-2024

    Summary

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    Gene symbol
    Saf-B
    Gene description
    Scaffold attachment factor B
    See related
    VectorBase:AGAMI1_002320
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP001298
    Orthologs
    fruit fly all
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    Genomic context

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    See Saf-B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (2644564..2651053)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase ctrip Neighboring gene probable mitochondrial glutathione transporter SLC25A40 Neighboring gene geranylgeranyl transferase type-2 subunit beta Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene transmembrane protein 256 homolog Neighboring gene Bardet-Biedl syndrome 5 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAFB-like transcription modulator
    Names
    AGAP001298-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      2644564..2651053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061651893.1 → XP_061507877.1  SAFB-like transcription modulator isoform X1

    2. XM_321849.6 → XP_321849.6  SAFB-like transcription modulator isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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